GgaEX1025675 @ galGal4
Exon Skipping
Gene
ENSGALG00000003941 | FUBP3
Description
far upstream element-binding protein 3 [Source:RefSeq peptide;Acc:NP_001006199]
Coordinates
chr17:5918184-5932207:+
Coord C1 exon
chr17:5918184-5918289
Coord A exon
chr17:5928440-5928497
Coord C2 exon
chr17:5932109-5932207
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTCTTTCCTTTGTAGACA
3' ss Score
11.33
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
ATTGCTGCTAAAATTGGAGATATTCCTCACTTGAATAATTCTACAACACTCGTGGACCCGTCAGTTTACGGTTATGGAGTGCAGAAACGGCCCCTTGATGATGGAG
Seq A exon
ACAGTGGCGGGATGCCTGAAAGGCCCTGTGTGCTCACCGGGACGCCAGAGAGCATTGA
Seq C2 exon
GAGCGAACAGGTGTGAAAATGATTATGATCCAAGATGGTCCAATGCCTACTGGAGCAGATAAACCTCTCCGTATTACTGGAGATGCATTTAAAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941_MULTIEX1-5/7=C1-C2
Average complexity
C3*
Mappability confidence:
83%=83=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.640 C2=0.606
Domain overlap (PFAM):
C1:
NO
A:
PF0001324=KH_1=FE(30.2=100)
C2:
PF0001324=KH_1=FE(49.2=100)
Main Skipping Isoform:
ENSGALT00000039554fB7717
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACAACACTCGTGGACCCG
R:
ACGGAGAGGTTTATCTGCTCCA
Band lengths:
139-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]