RnoEX0037105 @ rn6
Exon Skipping
Gene
ENSRNOG00000009139 | Fubp3
Description
far upstream element binding protein 3 [Source:RGD Symbol;Acc:1307004]
Coordinates
chr3:10239387-10242784:-
Coord C1 exon
chr3:10242713-10242784
Coord A exon
chr3:10241457-10241514
Coord C2 exon
chr3:10239387-10239549
Length
58 bp
Sequences
Splice sites
3' ss Seq
CTTCTTGATTCTTCTTATAGAGA
3' ss Score
7.11
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
TTATTGGCAGGGGAGGTGAGCAGATTTCACGAATTCAAGCAGAATCTGGGTGCAAAATCCAGATTGCCTCAG
Seq A exon
AGAGTTCTGGGATTCCAGAGAGGCCCTGTGTACTTACCGGAACCCCAGAAAGTATTGA
Seq C2 exon
ACAAGCCAAACGGCTCCTGGGGCAGATTGTGGACCGATGTCGGAATGGGCCTGGCTTTCACAACGATATAGATGGCAACAGCACAATCCAGGAGCTTCTTATCCCTGCATCTAAAGTGGGGCTGGTCATCGGCAAAGGAGGGGAAACAATCAAGCAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009139_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.400 C2=0.091
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
PF0001324=KH_1=FE(30.2=100)
C2:
PF0001324=KH_1=PD(9.5=10.9),PF0001324=KH_1=PU(38.5=45.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGAGGTGAGCAGATTTCA
R:
TATCGTTGTGAAAGCCAGGCC
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]