BtaEX0015287 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005562 | GALNT13
Description
Bos taurus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) (GALNT13), mRNA. [Source:RefSeq mRNA;Acc:NM_001076886]
Coordinates
chr2:42142121-42317085:-
Coord C1 exon
chr2:42316238-42317085
Coord A exon
chr2:42152366-42152465
Coord C2 exon
chr2:42142121-42142289
Length
100 bp
Sequences
Splice sites
3' ss Seq
TATTCCATAATATCCTTCAGTGC
3' ss Score
4.99
5' ss Seq
CCGGTATGT
5' ss Score
9.2
Exon sequences
Seq C1 exon
TTAAGAAGGCTCCATGACTCGGCAAAATTCTAAGGTAGCCTGAATGGTGCACATCCTTGGATCAACCCCCTTGTCTTGAGGGTTAGAGGAACTCCGAATATGAGCTATCACCCGGTGATTAGATTTACCTGTGATTAATTAGAAAAAGGTGAAGAGAATTTGCAGCTGATTTTGAGTTAATCACGTGGAAACTTTAGGCCCTTCCTAGTCAGAGACATTCTTCTACAGGCCTTGAAGTTCAAAGCAGCCATGTTTTGAGGGCTCCTTGGCCTCTAGAAATTAAGAACCACAGGCAAGAAAGCGGGGACTTTATTCTTATAACTGCAAAACACTCAGTTTTGTCTACCATCGTGTGAGCTTAGAGAAGGATCTTAAATTCCAGAAAGGAACATGGCCTGACTAGCAAACTTAATTTCAGCCTTTTGAGGCCCTGAGCAGTTGGCATAGTTCTACTTTTCCCTGGACCACTGAGCCGCTGGAGACTGTGAGAATCTTCAAAG
Seq A exon
TGCCTTCCCTACCAGACATCAAAGGACAAGGGAACTTGGATGATGTGAGAGGTCAGCCACCCTTGGCACATCAGGCTGGAGTTGGTGTAGAGGAAGGCCG
Seq C2 exon
CTGTTATTTCAAGAAACCAAGAAGGGCCAGGAGAAATGGGAAAGGCTGTGCTGATTCCTAAAGATGACCAGGAGAAAATGAAAGAATTGTTTAAAATCAATCAGTTTAACCTTATGGCCAGTGATTTGATTGCCCTTAACAGAAGTCTGCCGGATGTAAGATTAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005562-'4-5,'4-4,5-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000057469fB2915
Main Skipping Isoform:
ENSBTAT00000057469fB2916
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGAAAGCGGGGACTTTA
R:
CTTTCCCATTTCTCCTGGCCC
Band lengths:
253-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development