BtaEX0015294 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005562 | GALNT13
Description
Bos taurus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) (GALNT13), mRNA. [Source:RefSeq mRNA;Acc:NM_001076886]
Coordinates
chr2:42142121-42317085:-
Coord C1 exon
chr2:42316917-42317085
Coord A exon
chr2:42316238-42316319
Coord C2 exon
chr2:42142121-42142289
Length
82 bp
Sequences
Splice sites
3' ss Seq
ACTAGCAAACTTAATTTCAGCCT
3' ss Score
1.54
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTTGTCAGCATTAACAAGAAGGAGCAGAAAACATGGATGCTACTTTAATAAATACATTTAGTTAACATGCGTTTGAAAATCAAGCCAAACAGGGAGCACTCAAGGGGCCCAGAATCCTGCAAAGAAGGGAAGCTGAGATGGGAGTCCAGCATTCAGAGTTATTTTCCAG
Seq A exon
CCTTTTGAGGCCCTGAGCAGTTGGCATAGTTCTACTTTTCCCTGGACCACTGAGCCGCTGGAGACTGTGAGAATCTTCAAAG
Seq C2 exon
CTGTTATTTCAAGAAACCAAGAAGGGCCAGGAGAAATGGGAAAGGCTGTGCTGATTCCTAAAGATGACCAGGAGAAAATGAAAGAATTGTTTAAAATCAATCAGTTTAACCTTATGGCCAGTGATTTGATTGCCCTTAACAGAAGTCTGCCGGATGTAAGATTAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005562_MULTIEX2-4/10=3-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000057469fB2918
Main Skipping Isoform:
ENSBTAT00000057469fB2916
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAAGCTGAGATGGGAGTC
R:
AGGGCAATCAAATCACTGGCC
Band lengths:
180-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development