BtaEX0015639 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012090 | GGTA1
Description
Bos taurus alpha-galactosyltransferase 1 (glycoprotein) (GGTA1), mRNA. [Source:RefSeq mRNA;Acc:NM_177511]
Coordinates
chr11:92330358-92374682:-
Coord C1 exon
chr11:92374433-92374682
Coord A exon
chr11:92364401-92364495
Coord C2 exon
chr11:92330358-92330473
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTTCTCCTCTGTCAGGGA
3' ss Score
10.09
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
CCGGGGGCCGGGCCGAGCTGGGAGCGTGCAGCCCGCTGCCCAGCGCCCGCCGGCTCCCTCGCGCCCCTGCCCGCCGCCCCGGAGGAGCGCCCGGCGGCCGGCCGACGGGAGCGCAGGCGGCACACCCCGCCCCGGCACGCCCCGCGGGGCTCGGGAGGAGGCAGCGCGCCGACTGTTCCGGCAGCCGAGGACGCCGCCGGGGAGCCGAGGCGCCGGCCAGCCCCCAGCGCGCCCAGCTTCTGCGGATCAG
Seq A exon
GGAAACCACGTGTCCTCAAGTGGCCAGCCAGCTGTCCCCAAGAGGAACTTGCCTGGCATTTGCACGGAAAGACGAGACACTTCACAAAATCAACG
Seq C2 exon
GAGTCAGAAGGCTGCACCTTCGCTTCCTCCCAGCCCTGCCTCCTTCTGCAGAACGGAGCTCAATAGAACTTGGTACTTTTGCCTTTTACTCTAGGAGGAGAGAAGCAGACGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012090_MULTIEX1-2/9=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCTTCTGCGGATC
R:
TCATCGTCTGCTTCTCTCCTCC
Band lengths:
135-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development