BtaEX0015640 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012090 | GGTA1
Description
Bos taurus alpha-galactosyltransferase 1 (glycoprotein) (GGTA1), mRNA. [Source:RefSeq mRNA;Acc:NM_177511]
Coordinates
chr11:92319580-92374682:-
Coord C1 exon
chr11:92374433-92374682
Coord A exon
chr11:92330358-92330473
Coord C2 exon
chr11:92319580-92319668
Length
116 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTATTCTTTTGACAGGAG
3' ss Score
6.69
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
CCGGGGGCCGGGCCGAGCTGGGAGCGTGCAGCCCGCTGCCCAGCGCCCGCCGGCTCCCTCGCGCCCCTGCCCGCCGCCCCGGAGGAGCGCCCGGCGGCCGGCCGACGGGAGCGCAGGCGGCACACCCCGCCCCGGCACGCCCCGCGGGGCTCGGGAGGAGGCAGCGCGCCGACTGTTCCGGCAGCCGAGGACGCCGCCGGGGAGCCGAGGCGCCGGCCAGCCCCCAGCGCGCCCAGCTTCTGCGGATCAG
Seq A exon
GAGTCAGAAGGCTGCACCTTCGCTTCCTCCCAGCCCTGCCTCCTTCTGCAGAACGGAGCTCAATAGAACTTGGTACTTTTGCCTTTTACTCTAGGAGGAGAGAAGCAGACGATGAG
Seq C2 exon
GAGAAAATAATGAATGTCAAAGGAAAAGTGATTCTGTCAATGCTGGTTGTCTCAACTGTCATTGTTGTGTTTTGGGAATATATCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012090_MULTIEX1-3/9=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCTTCTGCGGATCAG
R:
TGTGGATATATTCCCAAAACACAACA
Band lengths:
107-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development