HsaEX0027431 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr9:121467843-121500247:-
Coord C1 exon
chr9:121499650-121500247
Coord A exon
chr9:121479066-121479334
Coord C2 exon
chr9:121467843-121467931
Length
269 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTATTCTTTCGACAGGAG
3' ss Score
7.36
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTGAGTTTCCCAGAGTTTGGCCGTGCGCCAGCGCAGCGCAGCCCCTCCCAGCAGCACAGCACAGACCCCACCCCATCCTCCAACGCCCGGGGTTCCTGCTCTATCACCTACACCACCACCACCACGTGCAGGCCCGAGAAGGCAAAAGAGGCCCAGCCACTCTCACCGGGGATTTTATCCGCCTCCCCGGCACACACACACTCTCACTCACGCACTCGCTCGCCGGCCTTCCAGCTGTCTGTGTCCGGGGCGGGGACCGGCTTGGCGCAGCCCGCTGTCAGCGCTCGCCGGCTCCTCGCGCCCCTACCCGCTGCGCTCTGCCCAGAGCAGAAGCCCGGCCGGCCGGCCCACGGGCGGGAGGACGCGCCTCCGCTCGGGCGGAGGCGGCGCGGTGGCTGATCAGAGCGCGTAGGGCTTCGCCGGGGCCGGGAGCTGGGCGCGGTCCTGCTCAGCCCAGCTCACCGCGCGCCGGCCCTCGGCGCCCTGGTTCTGCGGATCAG
Seq A exon
GAGTTGAAACCAGCACCTTCCCTTTCTCTGAGTCCTGCCTCCTTCTGCAGAAGGGAGCTCAAAAGAACTTTGTTGTTTTGCCTTTTACTCTGGGGTGAAAGCGGCAGGAGGTATGTGAGATGGTGAAATGATTTGCTTCTGCCATGCTGGGGTCACGGGTGGATCGCCCTAAACTCTCGGTGGCCCCCTCAGTAGTTTTGGAAGAGGACCAAGTCCTTGTCTCTCCAGCAGTGGACCTGGAAGAAGGATGCCGGCTCAGGGACTTCACT
Seq C2 exon
GAGAAAATAATGAATGTCAAAGGAAAAGTAATTCTGTCAATGCTGGTTGTCTCAACTGTGATCATTGTGTTTTGGGAATTTATCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
Hs.97469_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTCTGTGTCCGGGG
R:
TGACAGAATTACTTTTCCTTTGACA
Band lengths:
307-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development