MmuEX0020389 @ mm9
Exon Skipping
Gene
ENSMUSG00000035778 | Ggta1
Description
glycoprotein galactosyltransferase alpha 1, 3 [Source:MGI Symbol;Acc:MGI:95704]
Coordinates
chr2:35278752-35316786:-
Coord C1 exon
chr2:35316715-35316786
Coord A exon
chr2:35288034-35288152
Coord C2 exon
chr2:35278752-35278932
Length
119 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTATTCTTTTGACAGGAG
3' ss Score
6.96
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
CCTTCCCTTGTAGACTCTTCTTGGAATGAGAAGTACCGATTCTGCTGAAGACCTCGCGCTCTCAGGCTCTGG
Seq A exon
GAGTTGGAACCCTGTACCTTCCTTTCCTCTGCTGAGCCCTGCCTCCTTAGGCAGGCCAGAGCTCGACAGAACTCGGTTGCTTTGCTGTTTGCTTTGGAGGGAACACAGCTGACGATGAG
Seq C2 exon
GCTGACTTTGAACTCAAGAGATCTGCTTACCCCAGTCTCCTGGAATTAAAGGCCTGTACTACATTTGCCTGGACCTAAGATTTTCATGATCACTATGCTTCAAGATCTCCATGTCAACAAGATCTCCATGTCAAGATCCAAGTCAGAAACAAGTCTTCCATCCTCAAGATCTGGATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035778-'1-9,'1-7,4-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.392
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCTTGTAGACTCTTCTTGG
R:
TGTGATCCAGATCTTGAGGATGGA
Band lengths:
252-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: