BtaEX0017175 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001146 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4921]
Coordinates
chr9:81267483-81333515:-
Coord C1 exon
chr9:81333415-81333515
Coord A exon
chr9:81278411-81278505
Coord C2 exon
chr9:81267483-81267583
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCTTATTGTTTATTTTTTAGATT
3' ss Score
10.37
5' ss Seq
CAGGTTAAT
5' ss Score
4.7
Exon sequences
Seq C1 exon
GATTTTTTAAAAGACAACAGTAATTGGATCTACTTGAAAAATTAAGTGAATTGATTTGTTTGGAACACTCTTTGACCAATTCTTTAACGTTTAGCCACTGG
Seq A exon
ATTCCCAGAAGTTGTGCATGTGTTCCTGTGGAGGGAGTTGGCATCGTTGAAAGCAAAGACGGCTGTGATGCACTTTTTTGATATGAGGATAACAG
Seq C2 exon
GAAGCGACAAGACAATCATGCCCATGAGAACTCTAAACCATTCAGGTAAACATTATATTTTTTAACTTTCCCCAAAATATATTTTGTCATCCATATTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001146-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACAACAGTAATTGGATCTACTTG
R:
TGAATGGTTTAGAGTTCTCATGGGC
Band lengths:
135-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development