HsaEX0030057 @ hg19
Exon Skipping
Gene
ENSG00000010818 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:4921]
Coordinates
chr6:143097284-143158184:-
Coord C1 exon
chr6:143158072-143158184
Coord A exon
chr6:143104658-143104752
Coord C2 exon
chr6:143097284-143097328
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTATTCATCTTTTAGATT
3' ss Score
10.8
5' ss Seq
CAGGTTAAT
5' ss Score
4.7
Exon sequences
Seq C1 exon
GTGGAGCCTTTGAATTTTTTAAAAGACCATAGTAATCAGATCTACTTGAAAAATTAAGTGAATTGATTTGGTTGGAATGCTCTTTTACCGATGCTTTAACATACAGCCACTAG
Seq A exon
ATTCCCAGAAGTTGTGCATGAGTTCCTGTGAGGAGAGTTGGCATCTTGGAAATCAAAGACGGTTGTGATGCAGTTTTTTGATATGAGGATAACAG
Seq C2 exon
GAAGCGTCAGGACAATCATGCCCATAAGAACTCTAAACTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010818-'3-5,'3-3,5-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGAATTGATTTGGTTGGAATGCT
R:
CTGAACAGTTTAGAGTTCTTATGGGC
Band lengths:
103-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)