BtaEX0017237 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100773787-100776289:+
Coord C1 exon
chr11:100773787-100774113
Coord A exon
chr11:100775241-100775360
Coord C2 exon
chr11:100776163-100776289
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTACCCTGCCCCGGGGCCAGACC
3' ss Score
3.74
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
ATATCAACGAGTGCCTGCAGCTGCCCGGGCCCTGTGCCTACCAGTGCCACAACCTCCAGGGCGGCTACCGCTGCCTGTGCCCGCCGGGCCAGACTCTCCTCCGCGATGGCAAGACTTGCACCCCACTGGAGCGCAGTGGACCAAACGTGACCACCGTCAGCCACGTCAGCCACCGGGACCCCCTGGTGGCCTGGCTGCAGGCCCGTGGCCCCAAGCCCAGAGGGTCCTACCACGCCTGGGTCTCCCTCCGACCGGGCCCCAGAGCCCTGAGCATGGGCCGGGCCTGGTGCCCGCCCGGCTTCATCCGGCAGAACGGCGTCTGCACAG
Seq A exon
ACCTGGACGAGTGCCGCGTGAGAAACCTGTGCCAACATGCCTGCCGAAACACAGAGGGCAGCTACCAGTGCCTCTGCCCTGCAGGCTACCGCCTCCTCCCCAGCGGGAAGAACTGCCAGG
Seq C2 exon
ACATCAACGAGTGTGAGGAGGACGGCATCGAGTGTGGGCCCAGCCAGATGTGCTTCAACACCCGTGGCAGCTACCAGTGTGTGGACACGCCGTGTCCCGCCACCTACCGGCAGGGCTCCAGCCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=36.4)
A:
PF126622=cEGF=PU(83.3=48.8)
C2:
PF126622=cEGF=PD(12.5=7.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGACCAAACGTGACCAC
R:
TGTTGAAGCACATCTGGCTGG
Band lengths:
254-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development