RnoEX0004138 @ rn6
Exon Skipping
Gene
ENSRNOG00000062252 | AABR07072853.4
Description
NA
Coordinates
chr3:10386365-10387794:-
Coord C1 exon
chr3:10387474-10387794
Coord A exon
chr3:10386759-10386878
Coord C2 exon
chr3:10386365-10386491
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCCCACCTGGACCAGACC
3' ss Score
4.41
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
ACATCAATGAGTGCCTACAGCTGCCCATGCCCTGTGTCTACCAGTGCCATAACCTCCAGGGCAGCTACCGATGCCTGTGCCCACCAGGCCAGACCCTCCTACAGGATGGCAGGACCTGTAACCCCCTGGGACGGAACGGTCAAAACATTACCATTGTCAGCCACCGGAACCCATCTTTGCCCTGGCTGCGATCTCGGATACCCAGGCCCAATGGTTCCTACCATGCCTGGGTCTCCCTCCGGCCTGGTTCTAGAGCCCTGAGTAGTGTGGGACGGGCCTGGTGCCCACCTGGCTTCATAAGGCAGGATGGCGTGTGTACAG
Seq A exon
ACCTTGATGAGTGCAGTGTGAGAAGCCTGTGTCAGCATGCCTGCCAAAACACGGAGGGTAGCTACTACTGTCTCTGCCCCTCTGGCTACCGCCTCCTTCCCAGCGGGAAGAACTGCCAGG
Seq C2 exon
ACATCAACGAGTGTGAGGAAGATGGCATCGAGTGTGGGCCTGGCCAGATGTGCTTCAACACCCGAGGCAGCTTCCAGTGTGTAGACACGCCCTGTCCTGCCACCTACCGGCAGGGCTCCAGCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062252-'42-51,'42-50,43-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGGCAGGACCTGTAACC
R:
CCACACTCGATGCCATCTTCC
Band lengths:
256-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]