BtaEX0017841 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031160 | IGLL1
Description
Bos taurus immunoglobulin lambda-like polypeptide 1 (IGLL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001083800]
Coordinates
chr17:72805861-73096545:+
Coord C1 exon
chr17:72805861-72805959
Coord A exon
chr17:72969792-72969860
Coord C2 exon
chr17:73096255-73096545
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGACCATCGCTTCGCTCCAGGCT
3' ss Score
6.74
5' ss Seq
CAGGCCAGG
5' ss Score
-0.55
Exon sequences
Seq C1 exon
GCTCTGCTCAGCTGTGGGGCCACAGACAGCAGGACGCCCTGACCATGTCCACCATGGCCTGGTCCCCTCTGCTCCTCACCCTGGTCGCTCTCTGCACAG
Seq A exon
GCTGAGGACGAGGCTGATTATTACTGTGCGTCTGCTGACCTCAGTCTTACTAGTCCCACAGTGCTCCAG
Seq C2 exon
GCTCCGTGGTCTCCTATGAACTGACCCAGCCGACTTCAGTGTCAGTGGCCTTGGGACAGACGGCCAAGATCACCTGCTCGGGGGACCTGCTGGATGAACAATATACTCAGTGGTACCAGCAGAAGCCGGGCCAGGGCCCTGTGAGGGTCATTTATAAAGATAGTGAGCGGCCCTCAGGGATCTCTGACCGGTTCTCTGGCTCCAGCTCAGGCAAAACAGCCACGCTGACCATCAGCGGGGCCCAGACCGAGGACGAGGCCGACTATTACTGTCAGTCAGCTGACAGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031160_MULTIEX1-6/6=C1-C2
Average complexity
C3*
Mappability confidence:
100%=89=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCCCCTCTGCTCCTC
R:
GCTTCTGCTGGTACCACTGAG
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development