BtaEX0041200 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001005 | ZNF280B
Description
Bos taurus zinc finger protein 280B (ZNF280B), mRNA. [Source:RefSeq mRNA;Acc:NM_001077935]
Coordinates
chr17:73002288-73010751:-
Coord C1 exon
chr17:73010655-73010751
Coord A exon
chr17:73009858-73009916
Coord C2 exon
chr17:73002288-73004111
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTGCCCGCCCCCAGGAT
3' ss Score
11.41
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
AGGCCTGAGGAGGCGTCGTCCCCACGGGCTTAACCCGGGGACCGCCTAGGGCCCGGTGAGCTGCCGGCAGTTCTGGCACCGCCGCCAACGGGGACCG
Seq A exon
GATGTGACCTTCTCCTGCCTGGGAAGTCTCAAGCGCTCGATTTTCAGTGTGCCCCTGAG
Seq C2 exon
GTGGCAGTTTATATAAAGGAAGCACTGGGACTTGTGGCCACATCCTTCAAGAATAAAGTATTTAAAATATGGAACCACCATGTATGTTATGTGAAGAAGACCAAGAGCCAGAACCACAGAAAAGCGTAGGAGAAACCAAACAAGTAGATGATGAAGATGCTGAACTGATCTTTGTTGGAGTGGAACATGTAAATGAAGATGCTGATCTGATCTTTGTTGGAATGACCTCAAATTCAAAACCAGTCGTTTCAAACATATTGAACAGAGTTACCCCAGGTTCATGTTCAAGGAGAAAAAGGTATGGTCACTTCAGGAAAGATAATGCTCACAAATTACAGCCTGTTAGTCATGTGACTCGTACATCCGAAGCAAAGATTGTCTTGCCAGTTTCTGACTCTGAATCAAGATCAACAGATAGTCCTATTATTATTGAGCCTTTGTCTAAACCTGATTATAAAAATATTTCACCACAAATAGTGCCTAATAGCTTTTCAGAGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001005-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138361=DUF4195=WD(100=33.9),PF056057=zf-Di19=WD(100=9.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTCCCCACGGGCTTAA
R:
TGAAGGATGTGGCCACAAGTC
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development