BtaEX0018605 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83867124-83886189:+
Coord C1 exon
chr5:83867124-83867249
Coord A exon
chr5:83877129-83877304
Coord C2 exon
chr5:83886025-83886189
Length
176 bp
Sequences
Splice sites
3' ss Seq
ACTCCTTCCACATTTTACAGGTA
3' ss Score
10.8
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTAATCCTGCCCTGTTCTGGTTCTCAAGGCATATTTCTCTTTGGGGGAGCATCTCCTTCAACCTGGCTGTGTTCATCAACTTAGCTGTGGCTCTCTTCTACCCATTTGGGGACGATGGAGATGAAG
Seq A exon
GTACTCTTTCACCGATGTTCTCAATTCTGCTTTGGATAGCAGTGGCAATCTGCACATCTATGCTGTTTTTCTTCTCCAAGCCTGTGGGTATTCGGCCATTTCTTGTGTCAGTAATGCTCAGATCAATATATACAATAGGTCTTGGGCCTACATTAATACTTCTTGGTGCAGCAAAT
Seq C2 exon
CTTTGTAATAAAATAGTGTTTCTGGTGAGTTTTGTTGGAAATCGGGGTACGTTCACCCGAGGCTACCGAGCGGTCATCCTGGATATGGCCTTTCTCTACCACGTGGCGTATGTCCTGGTTTGCATGCTGGGCCTCTTTGTCCATGAATTCTTCTATAGCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313-'62-67,'62-66,63-67
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(0.4=1.7)
C2:
PF0052026=Ion_trans=FE(23.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTTCTGGTTCTCAAGGC
R:
ATGCAAACCAGGACATACGCC
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development