GgaEX0020783 @ galGal3
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
NA
Coordinates
chr1:69856861-69861616:-
Coord C1 exon
chr1:69861491-69861616
Coord A exon
chr1:69858545-69858720
Coord C2 exon
chr1:69856861-69857025
Length
176 bp
Sequences
Splice sites
3' ss Seq
TCCCATTCTCCTCCATACAGGCA
3' ss Score
9.93
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
ATAATCCACTCCTATTTTGGTTCTCAAGACACATCTCTCTCTGGGGAAGTATTTCCTTCAACCTTGCTGTATTCATCAACTTAGCAGTTGCTCTATTCTATCCCTTTGGAGATGATGGAGATGAAG
Seq A exon
GCACACTTTCTCCGTTGATTTCGGTCCTCCTCTGGATAGCCGTGGCACTTTGTACAGCAATGCTGTTTTTCATCTCCAAGCCCGTTGGCATTCGACCCTTTCTGGTGTCTGTTATTCTCAGGTCTATATATACAATAGGGCTCGGTCCTACCTTGATACTTCTCGGTGCTGCTAAT
Seq C2 exon
CTTTGCAACAAAATAGTGTTCCTGGTGAGCTTTGTTGGAAACCGGGGAACTTTTACTCGTGGCTACAGAGCGGTCGTCATGGACATGGCTTTCCTCTATCACGTGGCATATGTCCTGGTCTGCATGCTGGGCCTCTGTGTGCACGAATTCTTCTACAGTTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071-'55-61,'55-60,56-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(0.4=1.7)
C2:
PF0052026=Ion_trans=FE(23.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACATCTCTCTCTGGGGA
R:
AGAATTCGTGCACACAGAGGC
Band lengths:
251-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]