BtaEX0018817 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019277 | KCNH3
Description
potassium channel, voltage gated eag related subfamily H, member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr5:30461275-30463019:-
Coord C1 exon
chr5:30462944-30463019
Coord A exon
chr5:30462539-30462786
Coord C2 exon
chr5:30461275-30461508
Length
248 bp
Sequences
Splice sites
3' ss Seq
GGACCACCGTCTCCTTTCAGATG
3' ss Score
9.43
5' ss Seq
GAGGTTTGC
5' ss Score
3.52
Exon sequences
Seq C1 exon
ATGCCGGCCATGCGGGGACTCCTGGCGCCGCAGAACACCTTCCTGGACACCATCGCCACGCGCTTCGACGGCACGC
Seq A exon
ATGCCGTTTCTGAAAAATTCAAAGTCAACGCTGCCCCAGACCAGGCGAAATGACTAGAACTCTCAGTCTGGGAGCCGGGCATGCTCTCTGTGCCTGGGGGAGAGAACCCGGAGCTACTTAATCTAATCTATCCCATCCCTGCGTCTGGCGCTGTCCCATCGACTACCCTCGAACTGGCAGGTTGGGGAGTGAGGCAAGGAAGCGTCAAGAGACAGCCCAGAGGCTTAAAAAACTGCTGTAGAAAAGAG
Seq C2 exon
ATAGTAACTTCGTGCTGGGCAACGCCCAGGTGGCGGGGCTCTTCCCCGTGGTCTACTGCTCTGATGGCTTCTGTGACCTCACGGGTTTCTCCCGGGCCGAGGTCATGCAGCGGGGCTGCGCCTGCTCCTTCCTCTATGGGCCAGACACAAGTGAGCTCGTCCGCCAACAGATCCGCAAGGCCCTGGATGAGCACAAGGAGTTCAAGGCTGAGCTGATCCTGTACCGGAAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019277-'0-1,'0-0,1-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.529 C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134261=PAS_9=PU(70.1=94.9),PF051168=S6PP=PU(60.7=68.4)
Main Inclusion Isoform:
ENSBTAT00000025668fB3548


Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCGGGGACTCCTGG
R:
TCCGGTACAGGATCAGCTCAG
Band lengths:
297-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development