Special

BtaEX0018821 @ bosTau6

Exon Skipping

Gene
Description
potassium channel, voltage gated eag related subfamily H, member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr5:30460710-30463019:-
Coord C1 exon
chr5:30462944-30463019
Coord A exon
chr5:30461275-30461508
Coord C2 exon
chr5:30460710-30460844
Length
234 bp
Sequences
Splice sites
3' ss Seq
TGAGAGGTGCTCTCTTGCAGATA
3' ss Score
6.93
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
ATGCCGGCCATGCGGGGACTCCTGGCGCCGCAGAACACCTTCCTGGACACCATCGCCACGCGCTTCGACGGCACGC
Seq A exon
ATAGTAACTTCGTGCTGGGCAACGCCCAGGTGGCGGGGCTCTTCCCCGTGGTCTACTGCTCTGATGGCTTCTGTGACCTCACGGGTTTCTCCCGGGCCGAGGTCATGCAGCGGGGCTGCGCCTGCTCCTTCCTCTATGGGCCAGACACAAGTGAGCTCGTCCGCCAACAGATCCGCAAGGCCCTGGATGAGCACAAGGAGTTCAAGGCTGAGCTGATCCTGTACCGGAAGAGTG
Seq C2 exon
GGCTCCCGTTCTGGTGTCTCCTGGATGTGATACCCATAAAGAATGAGAAAGGGGAGGTGGCCCTCTTCCTGGTCTCTCACAAGGACATCAGTGAAACCAAGAACCGAGGGGGGCCTGACAGCTGGAAGGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019277_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.038 A=0.013 C2=0.261
Domain overlap (PFAM):

C1:
NO
A:
PF134261=PAS_9=PU(70.1=94.9),PF051168=S6PP=PU(60.7=68.4)
C2:
PF134261=PAS_9=PD(29.0=67.4),PF051168=S6PP=PD(38.2=73.9)


Main Inclusion Isoform:


Main Skipping Isoform:
ENSBTAT00000025668fB3548


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCGGGGACTCCTGG
R:
CTGACTCCTTCCAGCTGTCAG
Band lengths:
204-438
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development