MmuEX6056373 @ mm9
Exon Skipping
Gene
ENSMUSG00000037579 | Kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:MGI Symbol;Acc:MGI:1341723]
Coordinates
chr15:99055292-99057546:+
Coord C1 exon
chr15:99055292-99055482
Coord A exon
chr15:99056739-99056972
Coord C2 exon
chr15:99057412-99057546
Length
234 bp
Sequences
Splice sites
3' ss Seq
CCCTTCGCATTCTCTTGCAGACA
3' ss Score
11.94
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
ACGGCTACTCTAGGGGGCGCGGGGCCCGGCGGGGGGCGGCCGAGCCAGGCGCCCTCCCCCGGCGCTGAGTCCCCGCGCCCCGGAGGGATGGGGCGGGCGGCCCCCGCCGCCTAAGATGCCGGCCATGCGGGGGCTCCTGGCGCCGCAGAACACCTTCCTGGACACCATCGCCACCCGCTTCGACGGGACGC
Seq A exon
ACAGCAACTTCGTGCTGGGCAACGCCCAGGTGGCGGGGCTCTTCCCTGTGGTCTACTGCTCCGATGGCTTCTGTGACCTCACGGGTTTCTCCAGAGCTGAGGTCATGCAGCGGGGCTGTGCCTGCTCCTTCCTCTATGGGCCAGACACCAGTGAGCTGGTCCGCCAACAGATCCGAAAGGCCCTAGATGAGCACAAAGAATTCAAGGCTGAACTGATCCTGTACCGGAAGAGTG
Seq C2 exon
GGCTTCCATTCTGGTGTCTCCTGGATGTGATACCTATAAAAAATGAGAAGGGGGAGGTGGCCCTCTTCCTGGTCTCTCACAAGGACATCAGCGAGACCAAGAACCGAGGAGGCCCTGACAACTGGAAGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037579-'2-1,'2-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.261
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(70.1=94.9),PF051168=S6PP=PU(60.2=67.1)
C2:
PF134261=PAS_9=PD(29.0=67.4),PF051168=S6PP=PD(38.6=73.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTACTCTAGGGGGCG
R:
TCTTGGTCTCGCTGATGTCCT
Band lengths:
292-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: