DreEX6036550 @ danRer10
Exon Skipping
Gene
ENSDARG00000069560 | kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-23]
Coordinates
chr9:28164719-28292351:-
Coord C1 exon
chr9:28292276-28292351
Coord A exon
chr9:28172080-28172313
Coord C2 exon
chr9:28164719-28164853
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTTCTCTCACAGACA
3' ss Score
11.94
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
ATGCCTGTGATGAGAGGTCTGCTGGCCCCGCAGAACACCTTCCTCGACACCATCGCCACCCGTTTCGATGGCACCC
Seq A exon
ACAGTAACTTTGTGTTGGGGAACGCGCAAGTCCAGTCTCTCTACCCCATCGTTTACTGTTCTGATGGCTTCTGTGAGCTCACTGGTTATGCCCGTGCAGAGCTGATGCAGAAGAGCTGTGCATGTCATTTCCTCTATGGGCCGGAGACCAGTGACAGGCTGATGGCACAGATCCAGGGTGCACTGGACGAGAGGAGGGAGTTCAAGACAGAACTGGTCTTCTACAAAAAAGGAG
Seq C2 exon
GAACTCAGTTCTGGTGTCTTCTGGATATCGTGCCCATTAAGAATGAGAAGGGAGAGGTGGTGCTCTTTCTAGTGTCACACAAGGACATTACAGACAACAAGAAAGACCAAGATGAAGAGCAGAGCCCAGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069560-'1-2,'1-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.304
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(69.8=93.7)
C2:
PF134261=PAS_9=PD(29.2=67.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTGATGAGAGGTCTGCT
R:
TCTGGGCTCTGCTCTTCATCT
Band lengths:
204-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]