GgaEX7011140 @ galGal4
Exon Skipping
Gene
ENSGALG00000003354 | KCNH4
Description
potassium channel, voltage gated eag related subfamily H, member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr27:4853885-4856867:-
Coord C1 exon
chr27:4856792-4856867
Coord A exon
chr27:4854113-4854346
Coord C2 exon
chr27:4853885-4854016
Length
234 bp
Sequences
Splice sites
3' ss Seq
GCAGCTGTGTCTCCTTTCAGACA
3' ss Score
8.51
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATGCCGGTGATGAAGGGTCTGCTGGCACCGCAGAACACCTTCCTGGACACCATCGCCACCCGCTTCGATGGCACAC
Seq A exon
ACAGCAATTTCATCCTGGCCAACGCTCAGGTCCGCCGTGGCTTCCCCATTGTCTACTGCTCTGACGGCTTCTGCGACCTGACCGGCTTTGCCCGCACCGAGGTGATGCAGAAGAACTGCAGCTGCCGCTTCCTGAGTGGGGCTGAGACCAGCGAGCCCGTCCTGCAGCGCATTGAGAAGGTGCTGGAGGGCAAGCAGGAGCAGCAGGCAGAGGTCTGCTTCTACAAGAAGGGTG
Seq C2 exon
GAGCTGCATTCTGGTGCCTGCTGGACATTATGCCCATCAAGAACGAGAAGGGGGAGGTGGTGCTCTTCCTCGTCTCCTTCAAGGACATCACAGAGAGCCGGGGCAAGAGCCATCCAAGTGACAAAAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003354-'0-4,'0-1,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.244
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(70.6=97.5)
C2:
PF134261=PAS_9=PD(28.4=68.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCGGTGATGAAGGGTCT
R:
TCCTTTTTGTCACTTGGATGGCT
Band lengths:
206-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]