HsaEX6022735 @ hg19
Exon Skipping
Gene
ENSG00000089558 | KCNH4
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4 [Source:HGNC Symbol;Acc:6253]
Coordinates
chr17:40330349-40333296:-
Coord C1 exon
chr17:40332888-40333296
Coord A exon
chr17:40330811-40331044
Coord C2 exon
chr17:40330349-40330495
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTGACCTCTTCTTCCCACAGACA
3' ss Score
11.83
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTGGGCCGCTCCCCTCTGGGAGGAGGGCTGCCCAGAGGGGTGCGGGTGTCGCTAGCGGCCCCTCCCCGTGTGGGGCCACGTGGCGGGTGCGGGCCGAGCCCGAGGGGAAGAACCTGGCCCGTGGGGAGGTGGGGGGGACCGAAACGGCGCTGAGCCGAGCCGAGAGCTACGGGGTTCGGAGCAGAGGCAGCGGCAGCGGCAGCGGCAGTAAGAGGGAGGGGAGGAGGCAGGAGGGCGCATGGGGCGCCCCGGCCCCTCCGACAGCGCGCCCCCTCCGGCCCGGCCGCGCTGAAAGCTCCCCAGCGCCGCGCCTTGAACCCACGCCCCGGGGCCATGCCGGTCATGAAGGGGTTGCTGGCCCCGCAAAACACCTTCCTGGACACCATCGCCACCCGTTTTGACGGAACGC
Seq A exon
ACAGCAACTTCCTGCTGGCCAACGCACAGGGCACACGGGGCTTTCCCATCGTCTACTGCTCCGACGGCTTCTGCGAGCTCACAGGCTACGGTCGCACCGAGGTCATGCAGAAGACCTGCAGCTGCCGTTTCCTCTACGGCCCAGAGACCAGTGAGCCAGCCCTGCAGCGTCTGCACAAAGCCCTGGAGGGCCACCAGGAGCACCGGGCTGAAATCTGCTTCTACCGCAAGGATG
Seq C2 exon
GCTCAGCCTTTTGGTGCCTCCTGGACATGATGCCCATCAAGAATGAGATGGGGGAGGTCGTGCTGTTCCTCTTTTCCTTCAAGGATATCACTCAGAGTGGAAGCCCAGGACTTGGCCCCCAAGGAGGCCGCGGGGACAGTAATCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089558-'0-1,'0-0,1-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.076 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(70.6=97.5)
C2:
PF134261=PAS_9=PD(28.4=62.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGGGGTTCGGAGCAGAG
R:
CGACCTCCCCCATCTCATTCT
Band lengths:
303-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)