RnoEX0046033 @ rn6
Exon Skipping
Gene
ENSRNOG00000018790 | Kcnh4
Description
potassium voltage-gated channel subfamily H member 4 [Source:RGD Symbol;Acc:621415]
Coordinates
chr10:88664773-88667345:-
Coord C1 exon
chr10:88667172-88667345
Coord A exon
chr10:88665227-88665460
Coord C2 exon
chr10:88664773-88664919
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTGACTTCTCCTTCCTGTAGACA
3' ss Score
10.19
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
Exon sequences
Seq C1 exon
GGCGCATGGGGCGCCCCGGCCCCGCCGGTAGCGCGCCCCCTCCGGCCAGGCCGCGCTGAACGCAGCCCGCGCAACGCCTCGAATTCGTACCCGGGGCCATGCCGGTCATGAAGGGGTTGCTGGCCCCGCAAAACACCTTTCTGGACACCATCGCCACTCGCTTTGACGGCACGC
Seq A exon
ACAGCAACTTTCTTCTGGCCAATGCCCAGGGCCCACGGGGTTTTCCCATCGTCTACTGCTCTGACGGCTTCTGTGAGCTCACAGGCTACGGCCGCACCGAGGTCATGCAGAAAACCTGTAGCTGCCGGTTCCTCTATGGCCCAGAGACCAGTGAGCCGGCCTTGCAACGGTTACAAAAAGCCCTGGAGGGCCACCAAGAACACAGAGCTGAAATCTGCTTTTACCGAAAGGATG
Seq C2 exon
GCTCGGCCTTTTGGTGTCTTCTGGACATGATGCCCATCAAAAATGAGATGGGAGAGGTTGTGCTTTTCCTATTTTCCTTTAAGGACATCTCTCAGAGTGGAGGCCCAGGACTTGGCTCACCAGGGATCCATGGGGACAATAATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018790-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.260
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(70.6=97.5)
C2:
PF134261=PAS_9=PD(28.4=62.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAACGCCTCGAATTCGTA
R:
CATGATTATTGTCCCCATGGATCCC
Band lengths:
252-486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]