DreEX6015833 @ danRer10
Exon Skipping
Gene
ENSDARG00000062565 | kcnh4a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4a [Source:ZFIN;Acc:ZDB-GENE-131125-34]
Coordinates
chr3:17397732-17416990:+
Coord C1 exon
chr3:17397732-17397807
Coord A exon
chr3:17414395-17414628
Coord C2 exon
chr3:17416859-17416990
Length
234 bp
Sequences
Splice sites
3' ss Seq
TCTGTATTTGTTGTGTACAGACA
3' ss Score
6.59
5' ss Seq
ACGGTAAAG
5' ss Score
7
Exon sequences
Seq C1 exon
ATGCCGGTGATGAAAGGGCTCCTGGCCCCTCAGAACACCTTTCTCGACACCATCGCCAAACGCTTTGATGGGACGC
Seq A exon
ACAGTAACTTCCTGCTGGGGAATGCTCAGGGGAGTCGCGGATACCCCATCGTGTACTGTTCAGACGGCTTCTGCGAGCTCACAGGCTTTGCGCGCACTGAGGTAATGAAGAAGACGTGCACATGTCAGTTTCTGCATGGACAGGAAACAAGCGAGAGAGTCACTCAGCAGGTGGAGAAAACCTTGGAAGGACAGAGAGAGTTCCAGACAGAGGTCTGCTATTACAGGAAGAACG
Seq C2 exon
GTACTACTTTCTGGTGTCTGCTGGACATTGTCCCTATTAAAAATGAGAAAGGAGAAGTGGTCCTTTTTCTCCTGTCCTTCAAAAACATCACTGACTCGTATGGTAAATCCCATTTGGGCTCCAGCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062565-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(69.5=92.4)
C2:
PF134261=PAS_9=PD(29.5=68.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGATGAAAGGGCTCCTG
R:
CTTCTGTGCTGGAGCCCAAAT
Band lengths:
204-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]