HsaEX6022735 @ hg38
Exon Skipping
Gene
ENSG00000089558 | KCNH4
Description
potassium voltage-gated channel subfamily H member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr17:42178331-42181081:-
Coord C1 exon
chr17:42180870-42181081
Coord A exon
chr17:42178793-42179026
Coord C2 exon
chr17:42178331-42178477
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTGACCTCTTCTTCCCACAGACA
3' ss Score
11.83
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GGCAGCGGCAGTAAGAGGGAGGGGAGGAGGCAGGAGGGCGCATGGGGCGCCCCGGCCCCTCCGACAGCGCGCCCCCTCCGGCCCGGCCGCGCTGAAAGCTCCCCAGCGCCGCGCCTTGAACCCACGCCCCGGGGCCATGCCGGTCATGAAGGGGTTGCTGGCCCCGCAAAACACCTTCCTGGACACCATCGCCACCCGTTTTGACGGAACGC
Seq A exon
ACAGCAACTTCCTGCTGGCCAACGCACAGGGCACACGGGGCTTTCCCATCGTCTACTGCTCCGACGGCTTCTGCGAGCTCACAGGCTACGGTCGCACCGAGGTCATGCAGAAGACCTGCAGCTGCCGTTTCCTCTACGGCCCAGAGACCAGTGAGCCAGCCCTGCAGCGTCTGCACAAAGCCCTGGAGGGCCACCAGGAGCACCGGGCTGAAATCTGCTTCTACCGCAAGGATG
Seq C2 exon
GCTCAGCCTTTTGGTGCCTCCTGGACATGATGCCCATCAAGAATGAGATGGGGGAGGTCGTGCTGTTCCTCTTTTCCTTCAAGGATATCACTCAGAGTGGAAGCCCAGGACTTGGCCCCCAAGGAGGCCGCGGGGACAGTAATCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089558-'0-1,'0-0,3-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.076 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(70.6=97.5)
C2:
PF134261=PAS_9=PD(28.4=62.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGGAGGAGGCAGGAG
R:
AAGTCCTGGGCTTCCACTCTG
Band lengths:
307-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains