DreEX6068310 @ danRer10
Exon Skipping
Gene
ENSDARG00000061990 | kcnh4b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4b [Source:ZFIN;Acc:ZDB-GENE-121214-54]
Coordinates
chr12:13366778-13378768:+
Coord C1 exon
chr12:13366778-13367217
Coord A exon
chr12:13373987-13374220
Coord C2 exon
chr12:13378637-13378768
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTTCTGTCCCACAGACA
3' ss Score
11.84
5' ss Seq
ATGGTAATA
5' ss Score
5.05
Exon sequences
Seq C1 exon
AACAAAAACAAAACCACGATGTTCTAGAGATGCACATCTCCTGGATTTTCCTCTGTTGTGCAGGTGTGCATGGGTGAGAGGGAAAAGACAAAGGGATAAAAACTAGTGGAAGTTAACATCAATGTATGCATTGAGAAGGAAGAATTTGTTTGTTTCCCATGTCAGACATCTATTGGACTCTAAAAGCTGGCTAAGGTATACAGTAAAGAGTCTTCATCTGGGTGGCAGTTGGATCGTGGAGGATGCGCTCTCTCTGCTGTACATTACATCTGCCCTGGCCACCCTTTCTTTGGGATGTAGTGAGGATTGATGCTTCATACAGGCTTTTCTCCTAAACATCTGCTGACTCTGGATACCTGGCATCATGCCAGTAATGAAGGGGCTGCTGGCACCCCAGAACACTTTCCTGGACACTATTGCCACCCGCTTCGATGGCACTC
Seq A exon
ACAGCAATTTCCTACTTGGGAATGCTCAGGGTCACCGTGGCTATCCCATTGTGTACTGTTCTGATGGATTCTGTGAGCTGACAGGGTTTGGACGAACAGAGGTGATGCAGAAGAATTGCAGCTGTCATTTTCTTTATGGCTCAGGCACTAGTGAGCAGGTTGTTCAGGGTGTGAAGAAAGCTATGGAGGGCAAGGAGGAGTATCAGGCTGAGGTCCAGTTCTACAAGAAGAATG
Seq C2 exon
GAAGTTTGTTCTGGTGTCTGTTGGACATTGTACCCATTAAGAATGAGAAGGGGGAGATGGTGCTTTTTCTCTTTTCTTTCAAAGACATCACAGAAACGCACGAGAAGAGCCATCACAGCAGCAAAACCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061990-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(69.5=92.4)
C2:
PF134261=PAS_9=PD(29.5=68.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGGGTGGCAGTTGGATC
R:
AAAGCACCATCTCCCCCTTCT
Band lengths:
292-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]