RnoEX6033980 @ rn6
Exon Skipping
Gene
ENSRNOG00000057315 | Kcnh3
Description
potassium voltage-gated channel subfamily H member 3 [Source:RGD Symbol;Acc:71070]
Coordinates
chr7:140788987-140894848:+
Coord C1 exon
chr7:140788987-140789217
Coord A exon
chr7:140894071-140894304
Coord C2 exon
chr7:140894714-140894848
Length
234 bp
Sequences
Splice sites
3' ss Seq
CCCTTGGTGTTCTCTTGCAGACA
3' ss Score
11.43
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
Exon sequences
Seq C1 exon
CTGCTGGGGCCTACGAGCCTGGGCCGGGCATAGCCCCCCGACGGCTACTCTAGGGGGCGCGGGGCCCGGCGGGGGGCGGCCGAGCCAGGCGCCCTCCCCCGGCGCTGAGTCCCCGCGCCCCGGAGGGATGGGGCGGGCGGTCCCCGCCGCCTAAGATGCCGGCCATGCGGGGGCTCCTTGCGCCGCAGAACACCTTCCTGGACACCATCGCCACCCGCTTCGACGGGACGC
Seq A exon
ACAGTAACTTCGTCCTGGGCAACGCCCAGGTGGCAGGGCTCTTCCCTGTGGTCTACTGCTCCGATGGCTTCTGTGACCTCACGGGTTTCTCCAGAGCTGAGGTCATGCAGCGAGGCTGTGCCTGCTCCTTCCTCTATGGGCCAGACACCAGTGAGTTGGTCCGCCAACAGATCCGAAAAGCCCTGGATGAGCACAAAGAATTCAAGGCTGAACTGATCCTGTACCGGAAGAGCG
Seq C2 exon
GGCTTCCATTCTGGTGTCTCCTGGATGTGATACCTATAAAAAACGAGAAGGGGGAGGTGGCCCTCTTCCTGGTCTCTCACAAGGACATCAGTGAGACCAAGAACCGAGGAGGCCCTGACAACTGGAAGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057315-'0-2,'0-0,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.261
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(70.1=94.9),PF051168=S6PP=PU(60.7=68.4)
C2:
PF134261=PAS_9=PD(29.0=67.4),PF051168=S6PP=PD(38.2=73.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGGCTACTCTAGGGGG
R:
CCTCCTCGGTTCTTGGTCTCA
Band lengths:
305-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]