BtaEX0018822 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019277 | KCNH3
Description
potassium channel, voltage gated eag related subfamily H, member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr5:30459513-30461508:-
Coord C1 exon
chr5:30461275-30461508
Coord A exon
chr5:30460710-30460844
Coord C2 exon
chr5:30459513-30459646
Length
135 bp
Sequences
Splice sites
3' ss Seq
AGCTGTGTCTTCATGCCCAGGGC
3' ss Score
7.12
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATAGTAACTTCGTGCTGGGCAACGCCCAGGTGGCGGGGCTCTTCCCCGTGGTCTACTGCTCTGATGGCTTCTGTGACCTCACGGGTTTCTCCCGGGCCGAGGTCATGCAGCGGGGCTGCGCCTGCTCCTTCCTCTATGGGCCAGACACAAGTGAGCTCGTCCGCCAACAGATCCGCAAGGCCCTGGATGAGCACAAGGAGTTCAAGGCTGAGCTGATCCTGTACCGGAAGAGTG
Seq A exon
GGCTCCCGTTCTGGTGTCTCCTGGATGTGATACCCATAAAGAATGAGAAAGGGGAGGTGGCCCTCTTCCTGGTCTCTCACAAGGACATCAGTGAAACCAAGAACCGAGGGGGGCCTGACAGCTGGAAGGAGTCAG
Seq C2 exon
GTGGTGGCCGACGCCGATATGGCCGGGCTGGATCCAAAGGTTTCAATGCCAACCGGCGACGGAGCCGGGCTGTGCTCTACCACCTGTCTGGGCACCTGCAGAAGCAGCCCAAGGGCAAGCACAAGCTCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019277_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.261 C2=0.333
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(70.1=94.9),PF051168=S6PP=PU(60.7=68.4)
A:
PF134261=PAS_9=PD(29.0=67.4),PF051168=S6PP=PD(38.2=73.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTGGTCTACTGCTCTGAT
R:
CCGGTTGGCATTGAAACCTTT
Band lengths:
246-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development