RnoEX0046029 @ rn6
Exon Skipping
Gene
ENSRNOG00000057315 | Kcnh3
Description
potassium voltage-gated channel subfamily H member 3 [Source:RGD Symbol;Acc:71070]
Coordinates
chr7:140894071-140895777:+
Coord C1 exon
chr7:140894071-140894304
Coord A exon
chr7:140894714-140894848
Coord C2 exon
chr7:140895644-140895777
Length
135 bp
Sequences
Splice sites
3' ss Seq
AAGTCTATCTCTTTGCCTAGGGC
3' ss Score
6.15
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
ACAGTAACTTCGTCCTGGGCAACGCCCAGGTGGCAGGGCTCTTCCCTGTGGTCTACTGCTCCGATGGCTTCTGTGACCTCACGGGTTTCTCCAGAGCTGAGGTCATGCAGCGAGGCTGTGCCTGCTCCTTCCTCTATGGGCCAGACACCAGTGAGTTGGTCCGCCAACAGATCCGAAAAGCCCTGGATGAGCACAAAGAATTCAAGGCTGAACTGATCCTGTACCGGAAGAGCG
Seq A exon
GGCTTCCATTCTGGTGTCTCCTGGATGTGATACCTATAAAAAACGAGAAGGGGGAGGTGGCCCTCTTCCTGGTCTCTCACAAGGACATCAGTGAGACCAAGAACCGAGGAGGCCCTGACAACTGGAAGGAGAGAG
Seq C2 exon
GTGGTGGCCGACGCAGATATGGTCGGGCAGGATCCAAAGGCTTTAATGCCAATCGGAGGCGCAGCCGGGCGGTTCTCTACCACCTCTCTGGTCACCTGCAGAAACAACCCAAGGGCAAGCACAAACTCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057315-'5-4,'5-2,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.261 C2=0.333
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(70.1=94.9),PF051168=S6PP=PU(60.7=68.4)
A:
PF134261=PAS_9=PD(29.0=67.4),PF051168=S6PP=PD(38.2=73.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAGAGCTGAGGTCATGC
R:
GGTTGTTTCTGCAGGTGACCA
Band lengths:
256-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]