DreEX6036551 @ danRer10
Exon Skipping
Gene
ENSDARG00000069560 | kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-23]
Coordinates
chr9:28159568-28172313:-
Coord C1 exon
chr9:28172080-28172313
Coord A exon
chr9:28164719-28164853
Coord C2 exon
chr9:28159568-28159707
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCTGTGTTGTGTTGTGGCAGGAA
3' ss Score
7.09
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
ACAGTAACTTTGTGTTGGGGAACGCGCAAGTCCAGTCTCTCTACCCCATCGTTTACTGTTCTGATGGCTTCTGTGAGCTCACTGGTTATGCCCGTGCAGAGCTGATGCAGAAGAGCTGTGCATGTCATTTCCTCTATGGGCCGGAGACCAGTGACAGGCTGATGGCACAGATCCAGGGTGCACTGGACGAGAGGAGGGAGTTCAAGACAGAACTGGTCTTCTACAAAAAAGGAG
Seq A exon
GAACTCAGTTCTGGTGTCTTCTGGATATCGTGCCCATTAAGAATGAGAAGGGAGAGGTGGTGCTCTTTCTAGTGTCACACAAGGACATTACAGACAACAAGAAAGACCAAGATGAAGAGCAGAGCCCAGAAAGAG
Seq C2 exon
ACGAGGAGACGGGGTTGGAGGTGCACAAGGTCACACGGCCACCGGGCTTCAATGCCAACCGGCGGCGCAGTAGAGCTGTGCTTTACCAGCTGTCTGGACACTTGCAGAAACAAGACAAGAGCAAACTCAAGATCAATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069560-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.304 C2=0.277
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(69.8=93.7)
A:
PF134261=PAS_9=PD(29.2=67.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGCAGAAGAGCTGTGCA
R:
TTCTGCAAGTGTCCAGACAGC
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]