GgaEX6027534 @ galGal3
Exon Skipping
Gene
ENSGALG00000003354 | KCNH4
Description
NA
Coordinates
chr27:4505985-4506850:-
Coord C1 exon
chr27:4506617-4506850
Coord A exon
chr27:4506389-4506520
Coord C2 exon
chr27:4505985-4506112
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTCTCCTCCCCACAGGAG
3' ss Score
13.7
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
ACAGCAATTTCATCCTGGCCAACGCTCAGGTCCGCCGTGGCTTCCCCATTGTCTACTGCTCTGACGGCTTCTGCGACCTGACCGGCTTTGCCCGCACCGAGGTGATGCAGAAGAACTGCAGCTGCCGCTTCCTGAGTGGGGCTGAGACCAGCGAGCCCGTCCTGCAGCGCATTGAGAAGGTGCTGGAGGGCAAGCAGGAGCAGCAGGCAGAGGTCTGCTTCTACAAGAAGGGTG
Seq A exon
GAGCTGCATTCTGGTGCCTGCTGGACATTATGCCCATCAAGAACGAGAAGGGGGAGGTGGTGCTCTTCCTCGTCTCCTTCAAGGACATCACAGAGAGCCGGGGCAAGAGCCATCCAAGTGACAAAAAGGAGG
Seq C2 exon
AGAAGCAGAGGAGCAAGAAACCCGGCAGCTCACACCTGCGGGCGGCACGGCGGCAGGGCCGGACGGTGCTGCACCGGCTCAGCAGCCAGTTTGCACGGCAGGACCGCGGTGAGATGAAAATCAATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003354-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.244 C2=0.302
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(70.6=97.5)
A:
PF134261=PAS_9=PD(28.4=68.9)
C2:
PF084125=Ion_trans_N=PU(10.0=16.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTCATCCTGGCCAACGCT
R:
GGGTTTCTTGCTCCTCTGCTT
Band lengths:
252-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]