MmuEX6089753 @ mm10
Exon Skipping
Gene
ENSMUSG00000035355 | Kcnh4
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4 [Source:MGI Symbol;Acc:MGI:2156184]
Coordinates
chr11:100756860-100757800:-
Coord C1 exon
chr11:100757567-100757800
Coord A exon
chr11:100757079-100757225
Coord C2 exon
chr11:100756860-100756987
Length
147 bp
Sequences
Splice sites
3' ss Seq
AATCTCTCTCCACCTCCCAGGCT
3' ss Score
7.06
5' ss Seq
ACGGTAACT
5' ss Score
7.53
Exon sequences
Seq C1 exon
ACAGCAACTTCCTTCTGGCCAATGCACAGGGCCCACGGGGTTTTCCCATCGTCTACTGCTCTGACGGCTTCTGTGAGCTCACAGGCTACGGCCGCACCGAGGTCATGCAGAAAACCTGTAGCTGTCGGTTCCTCTATGGCCCAGAGACCAGTGAACCAGCCCTGCAACGGTTGCAAAAAGCCCTGGAGGGCCACCAAGAACACCGAACTGAAATCTGCTTTTACCGAAAGGATG
Seq A exon
GCTCAGCCTTCTGGTGTCTTCTGGACATGATGCCCATCAAGAATGAGATGGGGGAGGTTGTGCTTTTCCTATTTTCCTTCAAGGACATCTCTCAGAGTGGAGGCCCAGGACTTGGCTCACCAGGAATCCATGGGGACAATAATCACG
Seq C2 exon
AAAACTCTCTTGGGAGGAGAGGAACTAGCTCAAGACTTAGGTCCACGAAGAGGCAGAACCGGACTGTCCTACACCGGTTGACTGGCCACTTTGGTCGCCGGGGCCAGAGCAGTGTGAAGGCCAACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035355-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.260 C2=0.395
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(70.6=97.5)
A:
PF134261=PAS_9=PD(28.4=62.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGCTCTGACGGCTTCTGT
R:
GGTGTAGGACAGTCCGGTTCT
Band lengths:
256-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types