BtaEX6088752 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001195 | KCNH4
Description
potassium channel, voltage gated eag related subfamily H, member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr19:42935470-42936425:-
Coord C1 exon
chr19:42936192-42936425
Coord A exon
chr19:42935728-42935874
Coord C2 exon
chr19:42935470-42935594
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTACCTCTCCACACCTGCAGGCT
3' ss Score
9.29
5' ss Seq
ATGGTAACC
5' ss Score
5.31
Exon sequences
Seq C1 exon
ACAGCAACTTCCTGCTGGCTAACGCACAGGGCCCACGGGGCTTTCCCATTGTCTACTGTTCCGACGGCTTCTGCGAGCTCACAGGCTACGGCCGCACCGAGGTCATGCAGAAAACCTGCAGCTGCCGCTTCCTGTACGGTCCAGAGACCAGTGAGCCAGCCCTGCAGAGGCTGCACAAGGCTCTGGAGGGCCATCAGGAGCACCGCGCTGAAATCTGCTTCTACCGAAAGGATG
Seq A exon
GCTCAGCATTTTGGTGCCTCCTGGACATGATGCCCATCAAGAATGAGATGGGGGAGGTCGTACTTTTCCTCTTCTCCTTCAAGGACATCACTCAGAGCGGAGGCCCAGGACTTGGCCCCCCAGGAGGCCATGGCGATAGTAATCATG
Seq C2 exon
AAAACTCCCTTGGCAGGAGGGGAGCCAGCTCAAGACTTCGATCTGCCAGGAGGCAGAGCCGTACTGTCCTACACCGACTGACCGGCCACTTTGGCCGCCGGGGCCAGGGAGGCATGAAAACCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001195-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.330 C2=0.560
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(70.6=97.5)
A:
PF134261=PAS_9=PD(28.4=62.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACTGTTCCGACGGCTTCT
R:
GGTGTAGGACAGTACGGCTCT
Band lengths:
258-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]