DreEX6015832 @ danRer10
Exon Skipping
Gene
ENSDARG00000062565 | kcnh4a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4a [Source:ZFIN;Acc:ZDB-GENE-131125-34]
Coordinates
chr3:17414395-17417216:+
Coord C1 exon
chr3:17414395-17414628
Coord A exon
chr3:17416859-17416990
Coord C2 exon
chr3:17417092-17417216
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTTCTTGACCCACAGGTA
3' ss Score
11.42
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
ACAGTAACTTCCTGCTGGGGAATGCTCAGGGGAGTCGCGGATACCCCATCGTGTACTGTTCAGACGGCTTCTGCGAGCTCACAGGCTTTGCGCGCACTGAGGTAATGAAGAAGACGTGCACATGTCAGTTTCTGCATGGACAGGAAACAAGCGAGAGAGTCACTCAGCAGGTGGAGAAAACCTTGGAAGGACAGAGAGAGTTCCAGACAGAGGTCTGCTATTACAGGAAGAACG
Seq A exon
GTACTACTTTCTGGTGTCTGCTGGACATTGTCCCTATTAAAAATGAGAAAGGAGAAGTGGTCCTTTTTCTCCTGTCCTTCAAAAACATCACTGACTCGTATGGTAAATCCCATTTGGGCTCCAGCACAGAAG
Seq C2 exon
AGGACAGACGTCACGGCAGGAAAGTGGGTCGAACTCACCTGAGTCAAGCTCGAGAGCGTGGCCGCAACGTCCTGTACCACTTGACCTGCCAGTTCACTAATAGGAGCAAACGAAAGCTGCCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062565-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.089 C2=0.333
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(69.5=92.4)
A:
PF134261=PAS_9=PD(29.5=68.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCACATGTCAGTTTCTGC
R:
TTTGGCAGCTTTCGTTTGCTC
Band lengths:
244-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]