RnoEX0046035 @ rn6
Exon Skipping
Gene
ENSRNOG00000018790 | Kcnh4
Description
potassium voltage-gated channel subfamily H member 4 [Source:RGD Symbol;Acc:621415]
Coordinates
chr10:88664550-88665460:-
Coord C1 exon
chr10:88665227-88665460
Coord A exon
chr10:88664773-88664836
Coord C2 exon
chr10:88664550-88664677
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTATTTTCCTTTAAGGAC
3' ss Score
10.62
5' ss Seq
ATGGTAACT
5' ss Score
6.06
Exon sequences
Seq C1 exon
ACAGCAACTTTCTTCTGGCCAATGCCCAGGGCCCACGGGGTTTTCCCATCGTCTACTGCTCTGACGGCTTCTGTGAGCTCACAGGCTACGGCCGCACCGAGGTCATGCAGAAAACCTGTAGCTGCCGGTTCCTCTATGGCCCAGAGACCAGTGAGCCGGCCTTGCAACGGTTACAAAAAGCCCTGGAGGGCCACCAAGAACACAGAGCTGAAATCTGCTTTTACCGAAAGGATG
Seq A exon
GACATCTCTCAGAGTGGAGGCCCAGGACTTGGCTCACCAGGGATCCATGGGGACAATAATCATG
Seq C2 exon
AAAACTCCCTTGGGAGGAGAGGAGCTAGCTCAAGACTTAGGTCCACGAGGAGGCAGAACCGGACAGTTCTACACCGGTTGACTGGCCACTTTGGTCGCCGGGACCAGGGAAGCGTGAAAGCCAATAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018790-'2-4,'2-3,3-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.260 C2=0.395
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(70.6=97.5)
A:
PF134261=PAS_9=PD(28.4=62.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAGCTGCCGGTTCCTCTA
R:
CTAGCTCCTCTCCTCCCAAGG
Band lengths:
147-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]