HsaEX0032983 @ hg19
Exon Skipping
Gene
ENSG00000089558 | KCNH4
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4 [Source:HGNC Symbol;Acc:6253]
Coordinates
chr17:40330118-40331044:-
Coord C1 exon
chr17:40330811-40331044
Coord A exon
chr17:40330349-40330495
Coord C2 exon
chr17:40330118-40330245
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCTCCATGCCTACAGGCT
3' ss Score
9.58
5' ss Seq
ACGGTAACA
5' ss Score
6.72
Exon sequences
Seq C1 exon
ACAGCAACTTCCTGCTGGCCAACGCACAGGGCACACGGGGCTTTCCCATCGTCTACTGCTCCGACGGCTTCTGCGAGCTCACAGGCTACGGTCGCACCGAGGTCATGCAGAAGACCTGCAGCTGCCGTTTCCTCTACGGCCCAGAGACCAGTGAGCCAGCCCTGCAGCGTCTGCACAAAGCCCTGGAGGGCCACCAGGAGCACCGGGCTGAAATCTGCTTCTACCGCAAGGATG
Seq A exon
GCTCAGCCTTTTGGTGCCTCCTGGACATGATGCCCATCAAGAATGAGATGGGGGAGGTCGTGCTGTTCCTCTTTTCCTTCAAGGATATCACTCAGAGTGGAAGCCCAGGACTTGGCCCCCAAGGAGGCCGCGGGGACAGTAATCACG
Seq C2 exon
AAAACTCCCTTGGTAGAAGGGGAGCCACCTGGAAATTTCGGTCTGCCAGAAGACGGAGCCGTACTGTCCTACACCGACTGACCGGCCACTTTGGCCGCCGGGGCCAGGGAGGCATGAAGGCCAATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089558_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.300 C2=0.093
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(70.6=97.5)
A:
PF134261=PAS_9=PD(28.4=62.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTCCCATCGTCTACTGC
R:
GGCAGACCGAAATTTCCAGGT
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)