DreEX6068309 @ danRer10
Exon Skipping
Gene
ENSDARG00000061990 | kcnh4b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4b [Source:ZFIN;Acc:ZDB-GENE-121214-54]
Coordinates
chr12:13373987-13380137:+
Coord C1 exon
chr12:13373987-13374220
Coord A exon
chr12:13378637-13378768
Coord C2 exon
chr12:13380010-13380137
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGTTTTTTTTAACAGGAA
3' ss Score
11.36
5' ss Seq
ATGGTACGG
5' ss Score
8.21
Exon sequences
Seq C1 exon
ACAGCAATTTCCTACTTGGGAATGCTCAGGGTCACCGTGGCTATCCCATTGTGTACTGTTCTGATGGATTCTGTGAGCTGACAGGGTTTGGACGAACAGAGGTGATGCAGAAGAATTGCAGCTGTCATTTTCTTTATGGCTCAGGCACTAGTGAGCAGGTTGTTCAGGGTGTGAAGAAAGCTATGGAGGGCAAGGAGGAGTATCAGGCTGAGGTCCAGTTCTACAAGAAGAATG
Seq A exon
GAAGTTTGTTCTGGTGTCTGTTGGACATTGTACCCATTAAGAATGAGAAGGGGGAGATGGTGCTTTTTCTCTTTTCTTTCAAAGACATCACAGAAACGCACGAGAAGAGCCATCACAGCAGCAAAACCGATG
Seq C2 exon
ATAAGGCAAACAGCAGGACTACTGAAAAGTCTCATATCAGTAAAGCTAGAAGGAGGGGTCATGCCATGATTTACCAGCTAACCAGCCAGTTTACACGTGACAGCAAAAATGACGTCAAATTAAGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061990-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.222 C2=0.302
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(69.5=92.4)
A:
PF134261=PAS_9=PD(29.5=68.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGAACAGAGGTGATGCAG
R:
GCTGTCACGTGTAAACTGGCT
Band lengths:
249-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]