DreEX6015826 @ danRer10
Exon Skipping
Gene
ENSDARG00000062565 | kcnh4a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4a [Source:ZFIN;Acc:ZDB-GENE-131125-34]
Coordinates
chr3:17435173-17441478:+
Coord C1 exon
chr3:17435173-17435372
Coord A exon
chr3:17438518-17438767
Coord C2 exon
chr3:17441279-17441478
Length
250 bp
Sequences
Splice sites
3' ss Seq
TGCTTTACCTGTCCCTTTAGCTT
3' ss Score
9.02
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
CTCTGATGCATGCGGTGGTGTTTGGAAACGTGACCGCCATCATCCAGCGCATGTACTCTCGCCGTTCTCTCTACCACACGCGCATGAAGGACCTGAAGGACTTTATCCGTGTGCATCGCCTGCCGCAGCAGCTCAAGCAGCGCATGCTGGAGTACTTCCAAACCACTTGGTCTGTCAACAATGGCATCAACGCCAACGAG
Seq A exon
CTTTTGCATGACTTCCCGGACGAGCTGCGGGCAGACATCGCCATGCACCTGAATAAAGACATTCTGCAGCTGCCACTCTTCTCCTCTGCCAGTAGAGGGTGTCTGCGTTCACTCTCTCTGCACATTAAAACCTCCTTCTGCGCTCCTGGAGAATACCTCATACGGCACGGGGACGCTCTGCATGCCCAACACTTTGTCTGCTCGGGGTCATTGGAGGTTCTGAAGGACGGCATGGTGCTGGCCATACTGG
Seq C2 exon
GTAAAGGAGACCTGGTTGGTGCGGATCTGCCTGGGAAGGATCAGGTGATCAAAGCTAATGCGGATGTGAAGGCCCTGACTTACTGTGACTTACAGTACATCAGTGTTCGAGCGCTGCAGGAGGTTCTGGAGCTTTACCCTGAATACGGCAGCCGCTTCAATGAGGACATTCACCACAACCTCACCTACAACCTCAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062565-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
PF0002724=cNMP_binding=PU(45.5=47.6)
C2:
PF0002724=cNMP_binding=PD(53.4=70.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCGGTGGTGTTTGGAAAC
R:
GCGCTCGAACACTGATGTACT
Band lengths:
306-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]