RnoEX6049701 @ rn6
Exon Skipping
Gene
ENSRNOG00000018790 | Kcnh4
Description
potassium voltage-gated channel subfamily H member 4 [Source:RGD Symbol;Acc:621415]
Coordinates
chr10:88654014-88656864:-
Coord C1 exon
chr10:88656665-88656864
Coord A exon
chr10:88654813-88655062
Coord C2 exon
chr10:88654014-88654252
Length
250 bp
Sequences
Splice sites
3' ss Seq
ACCTCTGCCTCTTATGACAGTTA
3' ss Score
8.36
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
CGCTGATGCACGCGGTGGTGTTTGGGAATGTCACAGCCATCATCCAGCGCATGTACTCCCGACGCTCGCTCTACCACAGCCGCATGAAGGATCTCAAGGACTTCATCCGAGTGCATCGTCTGCCCCGCCCACTCAAGCAGCGCATGCTCGAGTACTTCCAGACTACATGGGCCGTCAACAGCGGCATCGATGCCAACGAG
Seq A exon
TTACTGCGTGACTTCCCGGATGAGCTGCGAGCTGACATCGCCATGCACCTGAATCGGGAGATCCTGCAGCTGCCTTTGTTTGGAGCAGCAAGCAGGGGCTGCCTTCGTGCCCTCTCCCTGCACATCAAGACCTCATTTTGTGCTCCTGGGGAGTTCCTGCTACGCCGTGGGGATGCCCTGCAGGCACACTACTATGTCTGCTCTGGCTCTCTTGAGGTGCTCCGAGACAACACGGTGCTGGCCATCCTTG
Seq C2 exon
GAAAGGGGGACTTGATTGGGGCAGACATCCCTGAGTTGGGGCAGGAGCCTGGGGCAGGGGCAGGCTGCGTGCTGAAGACCAGCGCTGATGTGAAAGCACTGACTTACTGCGGCCTGCAGCAGCTGAGCAGCCGAGGGCTGGCCGAGGTCCTTCGGTTGTATCCGGAATATGTGGCTGCCTTCAGGGCTGGCCTACCCCGGGACCTAACCTTCAACCTGCGCCAAGGCTCTGAAAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018790-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
PF0002724=cNMP_binding=PU(41.7=47.6)
C2:
PF0002724=cNMP_binding=PD(57.3=68.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCGCATGAAGGATCTCAA
R:
TGAAGGCAGCCACATATTCCG
Band lengths:
307-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]