MmuEX6089759 @ mm9
Exon Skipping
Gene
ENSMUSG00000035355 | Kcnh4
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4 [Source:MGI Symbol;Acc:MGI:2156184]
Coordinates
chr11:100608059-100611122:-
Coord C1 exon
chr11:100610923-100611122
Coord A exon
chr11:100608877-100609126
Coord C2 exon
chr11:100608059-100608303
Length
250 bp
Sequences
Splice sites
3' ss Seq
ACCTCCGCCTCTTCTGACAGTTA
3' ss Score
9.94
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
CGCTGATGCACGCAGTGGTGTTTGGGAATGTCACAGCCATCATCCAGCGCATGTACTCCCGACGCTCGCTCTACCACAGCCGCATGAAGGATCTCAAGGACTTCATCCGAGTGCATCGCCTGCCCCGCCCACTCAAGCAGCGCATGCTCGAGTACTTCCAGACGACGTGGGCAGTCAACAGCGGCATCGATGCCAACGAG
Seq A exon
TTACTGCGTGACTTCCCGGATGAGCTGCGTGCTGACATTGCTATGCACCTGAACAGGGAGATCCTGCAGCTGCCTCTGTTTGGAGCGGCTAGCAGGGGCTGCCTGCGGGCCCTCTCCTTGCACATCAAGACCTCCTTCTGTGCTCCTGGGGAGTACCTGTTACGCCGTGGGGATGCCCTCCAGGCACACTACTACGTCTGCTCTGGCTCGCTTGAGGTGCTCCGGGACAACATGGTGCTGGCCATCCTGG
Seq C2 exon
GGAAGGGGGACTTGATTGGGGCAGACATCCCTGAGTTGGGACAGGAGCCTGGGTCAGGGGCAGGCCCCAGCTGTGTGCTGAAGACCAGCGCCGATGTGAAAGCTCTGACTTACTGTGGCCTGCAGCAGCTGAGCAGCCGAGGGCTGGCGGAGGTCCTGCGGCTGTATCCGGAATATGCAGCTGCCTTCCGGGCTGGCCTACCCCGGGACCTAACCTTCAACCTGCGCCAAGGTTCTGAAAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035355-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.134
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
PF0002724=cNMP_binding=PU(40.8=47.6)
C2:
PF0002724=cNMP_binding=PD(58.2=69.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCACAGCCATCATCCAGC
R:
CTGCAGGCCACAGTAAGTCAG
Band lengths:
298-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: