GgaEX6027540 @ galGal3
Exon Skipping
Gene
ENSGALG00000003354 | KCNH4
Description
NA
Coordinates
chr27:4502892-4503932:-
Coord C1 exon
chr27:4503733-4503932
Coord A exon
chr27:4503191-4503440
Coord C2 exon
chr27:4502892-4503106
Length
250 bp
Sequences
Splice sites
3' ss Seq
CCTGGCTCCTCTCTCTCCAGCTG
3' ss Score
10.76
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
CGCTGATGCACGCCGTTGTCTTTGGCAACGTCACGGCCATCATCCAGCGCATGTACTCGCGCCGCTCGCTCTATCACACCCGCATGAAGGACCTCAAGGACTTCATCCGCGTGCACCGCCTGCCCCAGCAGCTCAAGCAGAGGATGCTGGAGTACTTCCAGACCACCTGGTCGGTGAACAACGGCATAGATGCTAACGAG
Seq A exon
CTGCTGCGTGACTTCCCCGACGAGCTCCGTGCCGACGTGGCCATGCACCTGAACAAGGACATCCTGCAGCTGCCCATCTTTGAGACCGCCAGCCGAGGCTGCTTGCGCTCCCTCTCGCTGCACATCAAGACGTCGTTCTGTGCGCCGGGCGAGTACCTGCTGCGGCAGGGCGATGCGCTGCAGGCCAACTACTTTGTCTGCTCCGGCTCCCTCGAGGTGCTGAGGGACAGCGTGGTGTTGGCCATCCTGG
Seq C2 exon
GCAAAGGGGATCTGATCGGTGCCGACCTGGCCAGCAGGGACCCGGTGATCAAAACCAACGCGGACGTGAAGGCGCTGACCTACTGCGACCTGCAGTACATTGGGCTGCGGGGGCTGCGTGAGGTGCTGCAGCTCTACCCCGAGTATGCCAGCAAGTTCGCAGCGGACATCCACCAGGACCTCACCTTCAACCTGCGGGAGGGCAGCGAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003354-'9-14,'9-13,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
PF0002724=cNMP_binding=PU(45.5=47.6)
C2:
PF0002724=cNMP_binding=PD(53.4=65.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATGAAGGACCTCAAGGAC
R:
GAAGGTGAGGTCCTGGTGGAT
Band lengths:
308-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]