BtaEX6088759 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001195 | KCNH4
Description
potassium channel, voltage gated eag related subfamily H, member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr19:42926357-42929405:-
Coord C1 exon
chr19:42929206-42929405
Coord A exon
chr19:42927149-42927398
Coord C2 exon
chr19:42926357-42926589
Length
250 bp
Sequences
Splice sites
3' ss Seq
GACCTTTGCCCCTTATGCAGTTA
3' ss Score
5.51
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
CGCTGATGCACGCCGTGGTATTTGGGAACGTGACGGCCATCATCCAGCGCATGTACTCGCGCCGCTCGCTCTACCACAGCCGCATGAAGGACCTCAAGGACTTCATCCGTGTGCACCGCCTACCACGGCCGCTCAAGCAGCGCATGCTCGAGTACTTCCAGACCACGTGGGCGGTCAACAGCGGCATTGACGCCAACGAG
Seq A exon
TTACTGCGTGACTTCCCAGACGAGCTGAGAGCTGATATTGCTATGCACCTGAATCGGGAGATCCTGCAGCTGCCGCTGTTTGGAGCAGCGAGCAGGGGCTGTCTGCGGGCCCTCTCCCTGCACATCAAGACCTCATTCTGCGCTCCTGGCGAATACCTGCTGCGCCGCGGGGATGCCCTGCAGGCGCACTACTACGTCTGCTCCGGCTCGCTGGAGGTGCTCCGTGACAACATGGTGCTGGCCATCCTAG
Seq C2 exon
GAAAAGGAGACCTGATTGGGGCAGATATCCCCGAGCCTGGGTCAGGCACAGCTCCAAGCTGCGTGCTGAAGACCAGTGCTGACGTGAAGGCACTCACCTACTGTGGCCTGCAGCAGCTGAGCAGCCAAGGGCTGGCTGAGGTCCTGAGGCTCTATCCTGAGTATGGAGCTGCCTTCCGGGCTGGCCTGCCCCGGGACCTCACCTTCAACCTGCGTCACGGCTCTGAGACCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001195-'10-14,'10-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
PF0002724=cNMP_binding=PU(42.6=47.6)
C2:
PF0002724=cNMP_binding=PD(56.4=67.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATGAAGGACCTCAAGGAC
R:
AAGGCAGCTCCATACTCAGGA
Band lengths:
295-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]