MmuEX0025037 @ mm9
Exon Skipping
Gene
ENSMUSG00000037579 | Kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:MGI Symbol;Acc:MGI:1341723]
Coordinates
chr15:99056739-99058473:+
Coord C1 exon
chr15:99056739-99056972
Coord A exon
chr15:99057412-99057546
Coord C2 exon
chr15:99058340-99058473
Length
135 bp
Sequences
Splice sites
3' ss Seq
AAGTCTGTCTCTTTGCCTAGGGC
3' ss Score
7.54
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
ACAGCAACTTCGTGCTGGGCAACGCCCAGGTGGCGGGGCTCTTCCCTGTGGTCTACTGCTCCGATGGCTTCTGTGACCTCACGGGTTTCTCCAGAGCTGAGGTCATGCAGCGGGGCTGTGCCTGCTCCTTCCTCTATGGGCCAGACACCAGTGAGCTGGTCCGCCAACAGATCCGAAAGGCCCTAGATGAGCACAAAGAATTCAAGGCTGAACTGATCCTGTACCGGAAGAGTG
Seq A exon
GGCTTCCATTCTGGTGTCTCCTGGATGTGATACCTATAAAAAATGAGAAGGGGGAGGTGGCCCTCTTCCTGGTCTCTCACAAGGACATCAGCGAGACCAAGAACCGAGGAGGCCCTGACAACTGGAAGGAGAGAG
Seq C2 exon
GCGGTGGCCGGCGCCGATATGGTCGGGCCGGATCCAAAGGCTTCAATGCCAATCGGAGGCGGAGCCGGGCAGTTCTCTACCACCTCTCTGGCCATCTGCAGAAGCAACCCAAGGGCAAGCACAAGCTCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037579-'3-3,'3-1,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.013 A=0.261 C2=0.333
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(70.1=94.9),PF051168=S6PP=PU(60.2=67.1)
A:
PF134261=PAS_9=PD(29.0=67.4),PF051168=S6PP=PD(38.6=73.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTTCCCTGTGGTCTACT
R:
ATTGAAGCCTTTGGATCCGGC
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types