MmuALTA0009522-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000037579 | Kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:MGI Symbol;Acc:MGI:1341723]
Coordinates
chr15:99057412-99058473:+
Coord C1 exon
chr15:99057412-99057546
Coord A exon
chr15:99058322-99058339
Coord C2 exon
chr15:99058340-99058473
Length
18 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CCTACAGCTTACTGTCACAGAAC
3' ss Score
3.85
Exon sequences
Seq C1 exon
GGCTTCCATTCTGGTGTCTCCTGGATGTGATACCTATAAAAAATGAGAAGGGGGAGGTGGCCCTCTTCCTGGTCTCTCACAAGGACATCAGCGAGACCAAGAACCGAGGAGGCCCTGACAACTGGAAGGAGAGAG
Seq A exon
AACCCTCTTTTCTTGTAG
Seq C2 exon
GCGGTGGCCGGCGCCGATATGGTCGGGCCGGATCCAAAGGCTTCAATGCCAATCGGAGGCGGAGCCGGGCAGTTCTCTACCACCTCTCTGGCCATCTGCAGAAGCAACCCAAGGGCAAGCACAAGCTCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037579-4-3,4-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.0=67.4),PF051168=S6PP=PD(38.6=73.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAGGACATCAGCGAGACC
R:
ATTGAAGCCTTTGGATCCGGC
Band lengths:
105-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: