BtaEX0018820 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019277 | KCNH3
Description
potassium channel, voltage gated eag related subfamily H, member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr5:30447629-30452692:-
Coord C1 exon
chr5:30452443-30452692
Coord A exon
chr5:30448836-30449013
Coord C2 exon
chr5:30447629-30447846
Length
178 bp
Sequences
Splice sites
3' ss Seq
CATCCTTATCCTATTTCCAGATG
3' ss Score
10.24
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
CTGCTGCAGAGCCTCCCAGACGAGCTCCGCGCTGACATCGCCATGCACCTGCACAAGGAGGTCCTGCAGCTGCCCCTGTTCGAGGCGGCCAGCCGGGGCTGCCTGCGGGCGCTGTCCCTGGCCTTGCGGCCCGCCTTCTGCACGCCGGGCGAGTACCTCATCCACCAGGGCGACGCCCTCCAGGCCCTCTACTTCGTCTGCTCTGGCTCCATGGAGGTGCTCAAGGGCGGAACTGTGCTCGCCATCCTAG
Seq A exon
ATGACACACATGAGGAGAGAGAGCTCATTCATCAGATGATCACACTGAGATCCAAACAGCTCTCAGAAGGAACCAGAAGGATGGCCGGGAGCCAAGAAAATAAGATTTAACGATGATGCGTTCTACACTTAAGTTTGAGCAAAAGTCCGTGAACATTTAGAGGAGGCCTTTAAGCTCA
Seq C2 exon
GGAAGGGAGACCTGATCGGCTGTGAGCTGCCCCGGCGTGAGCAGGTGGTCAAGGCCAACGCCGATGTGAAGGGGCTGACGTACTGCGTCCTACAGTGTTTGCAGCTGGCCGGGCTGCATGAGAGCCTGGCACTGTACCCCGAGTTTGCCCCCCGCTTCAGCCGGGGCCTCCGAGGGGAGCTCAGCTACAACCTGGGTGCTGGTGGAGGCCCCGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019277_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.306 C2=0.123
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(45.5=47.6)
A:
PF0002724=cNMP_binding=PD(30.5=48.6)
C2:
PF0002724=cNMP_binding=PD(53.4=64.4)
Main Inclusion Isoform:
ENSBTAT00000025668fB3549
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTCGTCTGCTCTGGCTCC
R:
ACCCAGGTTGTAGCTGAGCTC
Band lengths:
258-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development