BtaINT0079563 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019277 | KCNH3
Description
potassium channel, voltage gated eag related subfamily H, member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr5:30447629-30452692:-
Coord C1 exon
chr5:30452443-30452692
Coord A exon
chr5:30447847-30452442
Coord C2 exon
chr5:30447629-30447846
Length
4596 bp
Sequences
Splice sites
5' ss Seq
TAGGTTTGT
5' ss Score
4.07
3' ss Seq
CCTCTGCTGGCTCTTCTCAGGGA
3' ss Score
8.8
Exon sequences
Seq C1 exon
CTGCTGCAGAGCCTCCCAGACGAGCTCCGCGCTGACATCGCCATGCACCTGCACAAGGAGGTCCTGCAGCTGCCCCTGTTCGAGGCGGCCAGCCGGGGCTGCCTGCGGGCGCTGTCCCTGGCCTTGCGGCCCGCCTTCTGCACGCCGGGCGAGTACCTCATCCACCAGGGCGACGCCCTCCAGGCCCTCTACTTCGTCTGCTCTGGCTCCATGGAGGTGCTCAAGGGCGGAACTGTGCTCGCCATCCTAG
Seq A exon
GTTTGTGAGGGCGAAGTGGAGGATGCCAGGGCTGGGGAGCGGGGCGGGTGGAACCATGGTCCCTTCTGCAGAGAGATGTGGGCAAGGCCTCCAGGGAGAAGCAGCCAGGGTGGGGTCGGTAGCAGCCGTGGAGCCCTAGGCAAAGCTAAGAGCGGACCCGGTGACCACCAGGTGGCAACACGAAGAAGTGACCTCATCTCCTGGATTTCGGGAGGCCAGGATGAGAGCCAAGTGCCAGCCTTTGGTCTGTGAGAGGACGGAAGGGAGCACTTTCTGTCAAGGGGGAAAAATCAAATGCTAAAGATTCAAGTGCTGGCAAGTGTTCAGGCAGGAAAAAGGGAGGCATGAACGCTATTTTTTTTCTTTTAATTTATTGAAGTATAGTTGATTTACAATGTGTTAATTTCTGCTTTATGGTAAAGTGATTCAGTTATACATATATATACACAATCTTTTTAATATTTTTTTCCATTATGGTTTATCATAGAATATTGAATATACTCCCTTCGCTGCACAGCAGGACCTTGTTGTTTATCTATTCTATATATAATAGATTGCATCTGCTGATCCCAACCTCCCACTCCCTCCCTCCCTATCTTCCCTCCCCCTTGGCAACCATAAGTCTGTTCTCTATGTCTGTGAGTCTGTTTCTGTTTTGTAGATAAGTTCGTTTGTGTCATAGTTTAGATTCCACATATAAGTGGTATCATATGGCATTTCTCTCTCTTTCTGACTGACTTCACTTAGTATGATAATCTCTAGTTCCACCCATGTTGTTACGAATGGCATTATTTCATTCTTTTTTATGGCTGAGCAGTATTCCCATATACATATATACATACATGCCGTCTCTTCTTTATCCATGTGTTGGTCAATGTACATCTAGGTTGTTTCTATGTCTTGACTGTTGTAAACAGTAATGCTATGAACATAGGGGTGCTTGTATTTTTCTGAACTAGAGTTTTGTCTGGATATTTGCCCAGGAGTGGGATTGTTGGACCACATGGCAACTCTCTTTTTAGTTTTTTGAGGAATCTCCATGCTGTTTTCCATAGTGGCAGCATCAACTCAAATTCCCACCCACAGTGTACGAGGGTTCCCTTTTCTCCACACCCTCTCCAGCATTTGTTATTTGTAGACTTTTCAATAATGGCCATTCTGACCAGTGTGACGTGGTACTTCATTGGAGTTTTAGCTTGCATTTCTCTAATAAGTAGCGATGTTGAGCATCTTTTCATATGCCTGTTGCCTATCTGTATGTTTTCTTTGGAGAAATGTCTGTTTAGTTCTAATGCCCATTTTTTTGATCGGGTTGTTTTTTGCTGTGATTATGGTTGTTGTTGAGTTGTATGAGTTGCTTGTATATTTTGGAAATTAAGCTCGTTGGTCATATCATTTGCAAATATTTTCTCCAAATATATTCCATAGATTGTCTTTTCATTTTGTTTATGGTTTCCTTTGCTGTGCAAAAGCTTGTATTTGATTAGGTCCATCTGTTTATTTTTGCTTTTATTTCTATTGCCCTGGGAGATTGACCTAAAAAATTACTAGTATAATTTATGTCAGAGAATGTTTTGCCCATGTCCTCTTCTAGGGCTTTTACAGTACCATGTCTTATGTTTTTGAGCCACTTTGAGTTTATTTTTGTGTATGGTGAGAGGGAGTGTTCTAAGTTCATTGATTTACATGCAGCTGTCCAACTTTCCCACACCACTTGCTGAAGAGCCTGTTTTTTCTCCATTGTATATTCTTGCCTCCTTTGTCGAAGATTAATCGACTGTATGTGTGTGTATGCCATTTTTGTTAGAAAACAGGAGATGCTACTCTCCTAGAGCAGGCCCGGGATTGAGATGGGTGACAACAGAGCTCAGGCTCCAAATACATTTCCCTTCTTGGCAAAAGAAAAGACTGATCCTTAGATCAGTCCCTTAGATAAGAGGGAGAGATTGCAGTTGTGGAAGGGATGTGGTAACAGTGCTGGCCCCAGGGGTCCTACAGTGGAGCCAGCCCTGCATCCAGGCCCTTACATGCTTCAACTCACGCAAACCTCACAAAACCCAGCCGGGAGAAACTATTGCCAGTCTTGTTTTGCATGGAAGGAGACTGAGACTCTGAGAAGTTAATGAGTCGGCAGGCCACTAGGGCTAGAACCTGGCCTGCTAACTCAACCTCAGGCTTCAGACGTTGTGCTCTTAAGTGCTCTGCTCTGGGGAGAGTCCTCCCGCAAAAAGGGCGCGATTTCAGGGTGGTGGGCGACACGGGGCTGCAGGCTCCAGGGCTGTGGGGACGCTGTGGTCTCTGTGGGGAACAGAGGGCCTCACATACAGATGGAAGGTGCCCGGACCACAGCCAGTCCTCAGGCAGCAGTGCTTGCACACTCCCTGTGGGGACAGCTGCTGCTGCCTGGAGAGGCTGGAGTTTGTCACTCACCTGGAGAACCACCTGGCCAGCAGCAACCGTGTGTCCATCCTCTCGTCTCTGAGGATGGTCTTCCAACAGGAACAGAAGAAAGAAATACCATGAGAACCGAGAGAGGCATTGCTCACAAGTTTGGCTTCTGGCCCTACGTGCAGTTAATGCCAGGACCCTGAGCAAATGGAATTATGGCCATTCACGTATGGCTGGCAATCCGGGAGAAATTATGAGGAACTGGAGATAAATCAGAAAGGCAAAAAAGCAGATTTTGACAGTTGCAAACTGGTCACTCCAAAGCAAGATTGTCCAGTGGATTATTAAGCAGATGGCTTTCAGCTTGGAGCTGAGGAAGCAGCGTGGCTGGCAGCTGGCATGGGTCCTGCAAGAATCCCTCTTTGATGCCAGGCGCCAGGTCTCAGAATGCCCGTATCTGGTGTGAAGGCAGCCTCAAGGAGGGCCGCTGCCCACGGCCCACCTTTGCTTCCAGAATTCTCCACGCTGGGACGTACGCCACCTTTGATCCGTCCTGTCCCTGCCCGTATGTTCCAGATGAACGGTTTCCTCTGTTGACTTGGCTGCACTGGACGCCCTGATGGACGCCTGGCTCCCTAGCCTTCATGATAGCCTGGTTTTCTGCTTTGCCTTCACCCCATCTCCCACCTGCCTCCTTAGTTGAACATGCAGGTGCTTGCTGCCTGCTCCTGGCATCTAAGGCTCACGCATCTCTAGCAGTATCAATTCTGGCCTCTACCCCTGTGTATAAACTAACAGCTAAGCATGCAAAGTTAGTTATGGGGGAGGACAGAGGCAAGACAAAGGGAGATGAGCTGAGTGGTGGTGTGGGGAGGACCTCACACGCCTTGATGAGTTGAGCTGGAAGCTCTGGCTGAGGTCAGCTGGAAGCTGGTCCCCAAGACCAGTGGCACGGAACTCCATCCTTGGTCCTGTCCTATCTCTTGTTTTTCTCTCCCCTCTTGGATGAGAACAAGAAATACATCCTTATCCTATTTCCAGATGACACACATGAGGAGAGAGAGCTCATTCATCAGATGATCACACTGAGATCCAAACAGCTCTCAGAAGGAACCAGAAGGATGGCCGGGAGCCAAGAAAATAAGATTTAACGATGATGCGTTCTACACTTAAGTTTGAGCAAAAGTCCGTGAACATTTAGAGGAGGCCTTTAAGCTCAGTGAGTTCTGCTGGCAGCGGGAGGCAGCCCACAGCGGGGGTGGCGGCAAGCCATCTTTTTCCTTAAGGATGAGGAAAAGCTGTCTAATCTTGTGAAATGTCTGGCTGTGGGCTGAGCTTCCTTGTGAGGGCCATGAGTGCTCTGCCCAAGCCCCGGTGGCCAGCCATCCCTGATGGGAATCAGCTATAGGGGATTCTTGTTGAGAGGGAAGGGAAGGAAATGAACTTTGACCGACCATCTATGTGACCAATACTTTATACAAACTCATTTAATCCTCATGTCCCTGATTGGAGACATCCTATTTCATTGATTCTAAGTCATATGTTCCCCCCACACCCCCCTCCCACCCTGCAATTTAACATCTCTTGAGATTGGGGTGCGGACTCGAATTGATGCCATTTTACTATCGCTGTCAGCCAGGTGGCAGTCTCACTTGGGTGGTGGGGAACCCCTCCGTTGACACCTTCTGGTAAGATGAAGAAAGCACCACAGACTCAGTTCAGGACAGGATCTGCCATGTAGAAGAGGCACCAAGGCTCGGTGCAATAACATGACCCTCCCTCCCCCCAACACACACACAGCACTAACTTGCTGGTTCCACATACTGGTTCCTAGACAAGCTCCATCTGAATCACCCACGGGGCTTAAAAACAATTGCGTGGGCTCCAGTAGATATTATGATTCTGTACATAGTGATGGGGCTCCTTCCCTGGGGAGTCTGATAGGTTTAACTTTCCCAGAGGATTCTGATCCACATGCAACTTGGAGACCATTAGACTTAAAACTTGGGTGTTTCAGCACAGTGCTTTGACCCCAAAGGTGACTGAGCACCCGGGCCACCGGGCTGTTCTGAGAAGCCAGTGAGGCGGGCAGCGGGGGCTGGCCAGCGTCTGGGCCCCCCCGCTCCTGTCCTGGCTGGAGAGGCCCCAGGCATCCCCTGTCTGGTGGCTGAGGGACAGGGCTTGCTGACCTCTGCTGGCTCTTCTCAG
Seq C2 exon
GGAAGGGAGACCTGATCGGCTGTGAGCTGCCCCGGCGTGAGCAGGTGGTCAAGGCCAACGCCGATGTGAAGGGGCTGACGTACTGCGTCCTACAGTGTTTGCAGCTGGCCGGGCTGCATGAGAGCCTGGCACTGTACCCCGAGTTTGCCCCCCGCTTCAGCCGGGGCCTCCGAGGGGAGCTCAGCTACAACCTGGGTGCTGGTGGAGGCCCCGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019277:ENSBTAT00000025668:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.123
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(45.5=47.6)
A:
NA
C2:
PF0002724=cNMP_binding=PD(53.4=64.4)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]