RnoINT0077737 @ rn6
Intron Retention
Gene
ENSRNOG00000057315 | Kcnh3
Description
potassium voltage-gated channel subfamily H member 3 [Source:RGD Symbol;Acc:71070]
Coordinates
chr7:140901464-140906062:+
Coord C1 exon
chr7:140901464-140901713
Coord A exon
chr7:140901714-140905844
Coord C2 exon
chr7:140905845-140906062
Length
4131 bp
Sequences
Splice sites
5' ss Seq
TAGGTTCGT
5' ss Score
4.16
3' ss Seq
CCTTGGCTTCCTCTCCCCAGGGA
3' ss Score
10.91
Exon sequences
Seq C1 exon
CTGCTGCAGAGCCTTCCGGATGAGCTTCGAGCAGACATCGCCATGCACCTGCACAAGGAGGTCCTGCAGCTGCCATTGTTCGAGGCAGCGAGCCGTGGCTGCCTGCGGGCACTGTCTCTGGCCCTGAGGCCCGCCTTCTGCACGCCGGGCGAGTACCTCATTCACCAAGGCGATGCTCTCCAGGCTCTCTACTTTGTGTGCTCAGGTTCCATGGAGGTCCTCAAAGGTGGCACCGTCCTCGCCATTCTAG
Seq A exon
GTTCGTGAGAAGGGAGAAAGGGTACTTGGGGGCTCATGTGTCTAGGGAAGTCATGGTCATTCCAAGGAAAAAAATCAGAGAGTGGGTGCATACGAAGCCACAGAGGGGAGAAACAGACAGGATGGAGTCGGGAACAACCAGAGCCCTAGACAAAGCTCAAAGCCAGCGATAACAAAGTAGCAACATGGGAGGAGATGGCAACTTTGAGGCAGTTCCTAGGATGAGGTCAGAGACAGAGGCCAGCTTTTAAGAAGAGCCAGTGCATGATGGGATAGAGAAGACGTGGTAGAAAGTACAGAGGACAGTGCTCTAGTAGGGGAGAAAGAGGGCAGGTCACACAGAGCAAGTCCAAAGCCCAGGCAGGTGGCAATAGAGCTCAGTCTCCATGTGACACAGTGGACTCTCTCGGATAATAAAGAGCACACCCTTCCTTTGGCAAAAGGAAGAGAGGAAGTAACACATCAGCTTCCTAATGAGGACGAGGGACCAGCACAGCAGAGGGGACAGTAGACTTATGGAGGACTGTCTGCCCATCCCTTCCAGTCCGAGACTCCAGGAACTCATAGGAAACGTTACAGAAACCATTAGTATTCACCCAGCTAAGCTAGGCGTTGGCCGTATGTGTGGAATAGCCAGGTACCTTGGGAGGGTGATGGCCTCAGAAGGGAAGCATTTGAGGGGGGCCAGGTGTGCGCATGAGCACCAGGAAAGCCTGGGCTCAGAGGAGCACAGGCCTGCACCTAAAGGGGCAGCACTAAGTGTCTGTGGGAGGCTCTCACTGGTGACCCTGGAGGGCAAGGAACCAAGGCAGCCTGGGCAATTCAGGCGGGTTCATACACCAGGGGGAAGAGAGGTAATGACCAGGTCACAGACAAGTCCTTGGTGTGGGGACAACTAGAGCCCCACAGCCACAATAAAGACTAGAACAGGAAAGAACACAGGCAGTGGTGGTTGCTGGGCACCCCAGCAGCTACTGGTGCTCATCCCCTCTCACTTGAGAAGGAGGGCCCTCCAACAGCATTAGATGAAAGAAATGTCGCCAGGGGACTCGGAGCCTGAGCAAGGTGGCAGACTGTTGAAGCACTTTTTTTTTTTTTTCTCATCTTTTGTAAGTGCGGCTTCTGAGCTTAGACACAGAAGATACCAGAGCTAAGGAAACGGAGTTACGGCCATGTATGGTGGCATATGCTGGGAGTCCAAAGTAGGTGGAGCACTGAGGCAAGAGAACCGCTCGAGCACCTGAGGAGTATCTAAGCCAGCCTAGGAAACAGCAAGGCCATCTGAAAGAGAGAGGGAGAGAGGGAGGGGCAAAAAGGGAGGAAGTGAGGAAGGCAGGCAGACAGGCAAGGGCTTGGCTGATGCAGTGTTTGCCTAGCAAGCACAAGACCCTGGATTCAGTCCCCAGCATCACAGTAAACCAGGCATGGTGGAGCATGCTTGTATTCCCAGCCCCTGGGAGGTGGAGGCAGGAGGATCAGAAGTTCAAGGTTATCCTGGACTACATATGTGCTTAAGGCTAGAACTAGATAAATGAAACTCTGTTTCAAAAAGCAGAAGGAAAATAACTAACTGACTAACTAACTAACTAAGGAAGGAGGGAATATAGCACAACACAAGTGTGGCTAGTGACCCTTGAGGAACCCAGTAGAGCTGGGAAGACTGGTCAGGACAGGACTGTTCAGCTGGTCACTCGGTAGCTCCACATGTCTGCATTAAGTGCCTGGCTCAGATCCTGCTTGAGAACTGAGTGGTCTGTGTTTGCTATGGAGCCCAGGCTGGCCCTGAACTTGCCATCTGAGGGCTGGGAGTAGATGTGCCCACCTGTGACCTGGTTTTCTGCCTTGCTTTCATCCCAGCATCCCACCTGGCTCCTCAGCTGGGCATCCAGGTGTGTCCCACCTGGCTCCTCAACTGGGCATCCAGGTGTGTCCCACCTGCCTCCTCAACTGGGCATCCAGGTGTGTCCCACCTGCCTCCTCAACTGGGCATCCAGGTGTGTCCCACCTGCCTCCTCAACTGGGCATCCAGGTGTGTCCCACCTGGCTCCTCAGCTGGGCATCCAGGTGTGTCCCACCTGCCTCCTCAACTGGGCATCCAGGTGTGTCCCACCTGGCTCCTCAGCTGGGCATCCAGGTGTGTCCATCTGGCTCCTGGCAAGCTGAGTCTGGTCCTGTAGTCAACAGTAATGATTCTAGCCCCCACCTGTTTGTAAACTGACTCAGCCAAGTGTTCCAAGAGCTGTGATAGAGGATGCAACCCATGAGCTGAGCCTGGAAGCTGTGGCTGGGCGCAGGTCGCTGTTGACTCTCCTCAGGCTTGTTCCTCATTTGTGTCTCACTTTTGGCTGAGGACGGACTTATACCTGTCTTATTCCAGATCACACAAAACACAGCTCCTTCCTTGGAAAATCCCTTTATAACTCAAATAGCTCTCAGAGGATCCAGGAAACTTCAAAACAGGAGCAGAAAACTTAAATGAGGCTCATTCTGCACTTCAGTTTGAGCAAAACTCTGCAAACATTCAGAGGCCTCTGGGCTCCATGTGTGTTGACAGCGTCCACCTGTCTGGGTCTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTCCTAGGTAAGCACTCTACCACTGAGATAAATCCCCAGCCCCCACCTGTCTGGGTCTTAAAGGCCTTGACTATACTTACCTGGCAGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCATTGCACTCCGGATGTGCTGACCCCTGCGATTTCCCCAAATGCGGGAAACTCGACTGCATAATTTGTGGTAGTGGGGGACTGCGTTTGAGCTCTCCCCTGGCAAAAAAAAAAAAAAAAAAAAAAAAAGGCCTTGACTACCCCTTCTAATCTTTCTAACCACATGGCTGGCCTGGTAGGAGCCAAACTGCCTTTGCCAGTGCCCAGATTGTTGATCCCTGCTGGGATTGGACGAGAGGGAGGAGGGGAGATGCAGAGTGATGAAGGTCTCTGGTTGGCTCTGTCAGCCATCAACATTAACTCACCCGACCTTGTCCACAGGGCCACAGACTCGGGATGTGATTCTAAGACACACCTCCCCGTCAGACATCCTTGAGGTGTTCTGACGTCCTTTTGTGTTTTGGTTTTATTGTTTGTTTGTTTGTTTGTTTATGAGACAGGGTTTCCCAGTGTAGCCCTGGCTGTCCTGGAGCTAGCTATGTAAACGAGGCTGGCCTTGAGCTCACAGAGATCCACCTGCATCATTTGATAGTTGCTGTCAGCCAGGTGGTATTCTCAGCTAGCTTTGGAAAACCCTTTATGGTAAGATTAAGGCACGCCCCTCCAAACCCCAGGGCAATGCCAGCATAGCCATGATGTTTTCACCATGCCATACAGGGCACTGAACTGCTACTACCAGATTCTGGTCCCTGGACAAGCTATACCGAAATCGACTGTGGTTTAAGAAAATGATTGGGGGGGGTTGGGATTTGGCTCAGTGGTAGAGCACTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTTCCAAAAAAAAAAAAAAAAAAAAAAGAATAGGAAAAACAAAAAAGAAAATGATTGGGGGATGGAGTGATGGCTCAGAGGCTAAGAACACTGTTCTTCCAGAGGTCCTGGAGGTCCTGAGTTCAATTCCCATCAACCACAAGGTGGCTCACAACCATCTGTAAGGGGGTCCGATGCCCTCTTCTGGTGCGTCTGAAGACAGCTACAGTATACTCACATACGTAAAACAAATAAATAAATCTTTTAAAAAATTATCAGGTTGTAATGATAAGGGTTGTGCCGGGGCCTGGAAGTCTGATTGGTTTAATTTCCCCAGGGGAGTTTAATTAACGGGTGTCTGTCTGTCTGCGGACATTCCTGCTTGGATGCAGAAGTTTCGGCCAGTGTTTTGCCCTTGGAGGTGCTTGAGAGCCTGGGTCCTACTGTTCTCTACCCCAATTGTGTGCAAGAGTCAGAGAGAGCACGAGGGACCACACCATGGCTGGGGTCTCGATCTGCTCAGTCTACAGACCATTTCCCTCCCCAAGTGGCTTGCTAACCTTGGCTTCCTCTCCCCAG
Seq C2 exon
GGAAGGGTGACCTGATCGGCTGTGAGCTGCCCCAGCGAGAGCAAGTAGTGAAGGCCAATGCCGACGTAAAGGGGCTGACATACTGCGTCCTACAGTGCCTGCAGCTGGCTGGGCTGCACGAGAGCCTCGCACTGTACCCTGAGTTTGCCCCACGCTTTAGCCGTGGCCTCCGAGGGGAGCTCAGCTACAACCTGGGAGCTGGAGGAGTGTCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057315:ENSRNOT00000086611:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(45.5=47.6)
A:
NA
C2:
PF0002724=cNMP_binding=PD(53.4=64.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]