MmuINT0085475 @ mm9
Intron Retention
Gene
ENSMUSG00000037579 | Kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:MGI Symbol;Acc:MGI:1341723]
Coordinates
chr15:99064298-99068723:+
Coord C1 exon
chr15:99064298-99064547
Coord A exon
chr15:99064548-99068505
Coord C2 exon
chr15:99068506-99068723
Length
3958 bp
Sequences
Splice sites
5' ss Seq
TAGGTTCGT
5' ss Score
4.16
3' ss Seq
CCTTGGTTTCCTTTACCCAGGGA
3' ss Score
7.58
Exon sequences
Seq C1 exon
CTGCTGCAGAGCCTCCCGGATGAGCTTCGTGCAGACATCGCCATGCACCTGCACAAGGAAGTCCTGCAGCTGCCGCTGTTCGAGGCCGCCAGCCGTGGCTGCCTGCGGGCGCTGTCCCTGGCCCTGAGGCCGGCCTTCTGCACGCCGGGCGAGTACCTCATTCACCAAGGCGATGCTCTCCAGGCCCTCTATTTTGTCTGCTCGGGTTCCATGGAGGTCCTCAAAGGTGGCACCGTGCTCGCCATTCTAG
Seq A exon
GTTCGTGTGACAGGAGAGAGGGTGCTGGGGGGGGGCTCCCATGTCTAGGGAACCCAAGGCCATTACAAGGAAAAATCAGAGAGTGGGTGCATACACAGCCACCCAGAGAGAGACAGATAGGATGGAGTTCAGAACAGCCAGAGCTCTAGACAAAGTTCAAAGATGAGCCAGTGATAACAAAGTAGCAATACGGGAGGAGGTGGCAACTTTGAGGCTGTTCCTACGATGAGGCCAGTGAGGGGGGTCCAGCTTTTCATAGGAGCCAGTGCATGATGGGATAGAGAAGCCTTGTAGGAAAGTGCAGAGGTCAGTGCTCTAGCAAGGGAGAAAGAGGGCAGGTCATACAGAGCAGGTCCAAAGCCCAGCTGGGTGACAGCGGAGCTCAGCCTCCACGTGACAGGGTAGCGTCTCTCAGAGAAAGAGCATACCCTTCCTTTGACAAAAGGGAGAGGGGAAGTAACACATCAGCTTCCTAAATGAGGTCAAGGGATCAGCACAGCAGAGGGGACGGTAGACTCACAGAGGACTGGCTGGCCAGCCCTTCCATTCAGAGACGCTGCAAACTCATAGGAAGCATTAGAGAAACTATTATCATTCACCCAGCTAAGCTAGGCGTTGGCTGGGATGTATGGTATAGCCAGGTGCCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGACCTTAGAGGGGAAGCGTTTGAGGAGGGCCAGGTGTGCACACAAGCACCAGGAGAGCCTTGCTCTGTGAAGCACAGGCCTGCCCGGTAAAAGCCGGTGAAGGGGCTGGGCTATGCAGCCATGGGAGGCTCTGGCTGGCTCTGGAGGGCAAGGAACCGACATAGCCTGGGGAATCCAGGTGAGTTCGTGTACCAGGGGGAAGAGAGGTAAGGACCAGATCACAGCCAAGTCCTTGCTGTGGCGACAGCTAGAGCACCACAGCCACAGTGAAGACTAGGACAGACAAGACAGAGAAGGTGGTGGTACGTTGCTGGGCACCCCAGCAGCTACTAGTGCTCATCCCCTCTCCCTTGAGAAGGAGGGCCTTCCAACAGCATTAGATGGAAGAGATGTCGCCAGGGGCCTCGGAGCCTGAGCAAGGTGGCAGACTGTTAAAGCACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTCCATTCCATCTTTCTTACGCACAGCTTCTGAGCTTAGATACAACATATACCAGGACTGGGAAAACGGAGTTATGGCTGGGTACCGTGGCATATGCTTGGGACCCAAAGCAGGTGGAATGCCGAGGCAAGAGACTCGCTTGAGCGACAGAGGAGTTCTAAGCCAGCCTAGGGAACATAGCAAGACCATCTGAAAGAGAAGGGAGAGAGGGAGGGGCAAGAAGGGAGGAAGCGAGGAAGGCAGGCAGATGGGCAGACAGGCAAGGGCTAGGCATGAAGCTTAGCTGGTGCAGGGTTTGCTTAGCAAGGACAACACCCTGGATTCAGTCCTCAGCATTACATTTAACCAGGCACGGTGGCTCGTGCTTGGGATACCAGCCCTTGGGAGGTGGAGGCAGGAGGATCAGAAGTTCAAGGTCAGCACAGGCCTTTAAATCCCAGCACTCGGGAGGCAGAAGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAATCCTGTCTTGAACCCCCCACCCCCCAAAAAAAGAAGTTCAAGGTCATCCTGGACTACATATGAGCTTGAGGCCAGACTGGGATAAATGAAACCCTGTCTCAAAAAAGCAAAAGGAAAACCAAAATAAATAAATAAATAAATAAGGAAGGAGGGAGGGAATATAGTGTTATATACAACACAAGTGTGGCTAGTGACCCTTGAGGAACCGAGGAAAGCTGTCGTGGAAAGACTGGTCAGGGCACAATCGTCCAGCTGGTCACTCGGTAGCTCTGCACGCCCGCATAAGTGCCTGGCTCGGATCCTGCTCAAGAACTGAGTGTTCTGTATTTGCTATGGAGTCCAGTCTGACTCTGAACTTGCGGTCTCCTATTTTAGCCTCTGAGGGCTGGGAGTACATGTATCCAGCTGTGACCTGGTTTCCTGCCTTGCTTTCATTGCAGCATTCCACCTGCCTCCTCAGCTGGGCATTCAGGTGCATCCCACCTGCCTCCTCAGCTGGGCATTCAGGTGCATCCCACCTGCCTCCTCAGCTGGGCATTCAGGTGCATCCCACCTGCCTCCTCAGCTGGGCATTCAGGTGCATCCCAACTGGCTCCTGGCAAGCTGAGTCTGGCCCGTAGTCAACAGTAATGATTCTGGCTCCAACCTGTTTGTAAACTGACTCAGCCAAGTGTTCCAAGAGCAAGAGGATGTAACCCAATGAGCTGAGCCTGAAAGCTGTGGTCCAGGCGCCACCAGTGGCAGAGCCCAGGTCATTGTTGACTCTGTCCTTAGTCTTGTTCTCCTTTGTGTCTCACTTCTAGGCTGAGGACAGACTTACACCTGTCTTATTCCAGATCACACAAAACACAGCTCCTTCCTTAGAAAATCCCCCCTTGTAACTCAAATGGCTCTCGGAGGGTCCAGGAAACTTCAAAACAGGAGCAGAAAACTTAAACGAGGCTCATTCTGCCCTTCAGTCTGAGCAAAACTCTGCAAACATTTTGAGGCCTCTGAGTTGACCTGTCTTGGTCTTAAAGGCCTTGACCGCTCTTCCTAGTCTTTCTAATCAAGTGGCTTGGCCTGATAGGAGCCAAACTGCCTTTGCCTGCACCCTGGTTGTTGATCCCTGCTGGGGTTGAACAAGAAGGAAAAGGGAAGATGAGGAGCGACAAAGGTCTGTGGTTGGCCCTATCAGGGGATTCATCCCATTAACTCACAGACCCCAGGTGTGATACTAAGAATCACCTCCCCTGTGCGACATCCTTGAGGTTCCAACATTCTTTTTTTATTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAATTTAGATATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACCGCCTGGCCCAACATTCTTTTGTTTTGTTTTTCTGTTTGTTTTGTGAGACAGGGTTTCCCTGTGTAGCCCTGGCTGTCCTTGGAACTGGCTCTGTGAACAAGGCTGGTCTCAAACTCAGGAGATCTGCCCAAATCATTTGATAGTTGCTGTCAGTCAGGTGGTATTCTCAGCTAGCTTTGGAAAACGTTTATGGTGAGATCAAAGCTCCTCCCGCCCCCCCCCCTGCCCCCACCACACACACACCAAGGCAATGCCAGCATAGCTTTGGCGTTGACATTTTCGCTGTGACACACAGGGCACTAAACTGCTGCTACCAAATTCTGGTCCTTGGATAAACTGTACCCAAATCACCTGTGGGTCTTTAAGAAAATCAGATTGTGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAGACCCTGTCTCGAAAAAAAAAAAAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAATCAGATTGTATTGATAAGGGCTGAGCTGGCGCCTGGAGGAAGCCGGATTGGTTTAATTTCTTCAGGGGAGCTTAATTAAGAGCCTGTCTGTCTGCGGACACTCCTTGGATGGAGAGGTTTCAGCCAGTGTTTTGCCCTTGGAAGTGTTTGAGAGCCTGGGTCCCACTGTTCTCTACCCCAAGTGTGTGTAAGACCCAGTGAGAACTAGGGACCTCGCCACATCTGGGGCCTCTATCTGCCCGTGTTCCCTCCCCCACCCCCCAAGTGACTTGCTAACCTTGGTTTCCTTTACCCAG
Seq C2 exon
GGAAGGGTGACCTGATCGGCTGCGAGCTGCCCCAGCGGGAACAAGTAGTGAAGGCCAATGCAGACGTGAAGGGGCTGACATACTGCGTCCTACAGTGTCTGCAGTTGGCTGGGCTGCATGAGAGCCTTGCTCTGTACCCTGAGTTTGCCCCACGCTTTAGCCGTGGCCTCCGAGGGGAGCTCAGCTACAACCTGGGAGCTGGTGGAGTCTCTGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037579-Kcnh3:NM_010601:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(45.5=47.6)
A:
NA
C2:
PF0002724=cNMP_binding=PD(53.4=64.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: