BtaEX0018827 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016613 | KCNH6
Description
potassium channel, voltage gated eag related subfamily H, member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr19:48508072-48510066:+
Coord C1 exon
chr19:48508072-48508265
Coord A exon
chr19:48508463-48508501
Coord C2 exon
chr19:48509979-48510066
Length
39 bp
Sequences
Splice sites
3' ss Seq
ATGGCCAACATAATGCTAAGTAT
3' ss Score
-2.8
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
GAAAGAATGACATCTTTGGAGAGCCCGTCAGCCTCCATGCCCGGCCGGGCAAGTCCAGCGCAGATGTACGGGCCCTGACCTACTGTGACCTGCACAAGATCCAGCGGGCAGACCTGCTGGAGGTGCTGGACATGTACCCTGCCTTCGCAGACAGCTTCTGGAGTAAGCTGGAAGTCACCTTCAACCTGCGGGAC
Seq A exon
TATGAAGATAGCTACCAATTACGGAGCACCAACTATGTG
Seq C2 exon
GCAGGCGGTGGTCTCCAGTCATCACCCCAACAGGCTCCAGGCAGTCAAGACCACCAACAGGGCTTCTTCCTCAGTGACAACCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016613-'10-15,'10-14,11-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.800
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=72.3)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000022102fB3552
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACATGTACCCTGCCTTC
R:
GTTGGTGGTCTTGACTGCCTG
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development