BtaEX6089528 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016613 | KCNH6
Description
potassium channel, voltage gated eag related subfamily H, member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr19:48508072-48510748:+
Coord C1 exon
chr19:48508072-48508265
Coord A exon
chr19:48509979-48510066
Coord C2 exon
chr19:48510580-48510748
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATGCTCTTGTTCCCCACAAGGCA
3' ss Score
4.53
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAAAGAATGACATCTTTGGAGAGCCCGTCAGCCTCCATGCCCGGCCGGGCAAGTCCAGCGCAGATGTACGGGCCCTGACCTACTGTGACCTGCACAAGATCCAGCGGGCAGACCTGCTGGAGGTGCTGGACATGTACCCTGCCTTCGCAGACAGCTTCTGGAGTAAGCTGGAAGTCACCTTCAACCTGCGGGAC
Seq A exon
GCAGGCGGTGGTCTCCAGTCATCACCCCAACAGGCTCCAGGCAGTCAAGACCACCAACAGGGCTTCTTCCTCAGTGACAACCAGTCAG
Seq C2 exon
GTGCAGCCCCTTCCCTGAGCATCTCAGACGCATCTGGCCTCTGGCCTGAGTTGCTGCAGCAAGTGCCCCCCAGGCCAAATCAGAGCCCCCAAAACCCTCAGGGAGACTCAGACTGCTGGCCTCGGGAGCTAGGCTCCAGGCTAGAGCAGCTCCAGGCCCAGATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016613-'10-17,'10-15,12-17=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.800 C2=0.746
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=72.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCTGGACATGTACCCT
R:
GGGTTTTGGGGGCTCTGATTT
Band lengths:
172-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]